Job Description P0AA93 Confidence 99.96% Date Thu Jan 5 11:12:15 GMT 2012 Rank 8 Aligned Residues 316 % Identity 10% Template c3a0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) Resolution 3.80 Å

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		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.															.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	I	R	D	D	I	H	A	D	A	V	A	I	T	N	T	D	H	V	L	A	Y	V	G	V	G	E	H	N	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	G	D	D	F	I	S	P	T	T	R	Q	A	M	N	Y	G	K	I	I	I	K	N	N	D	E	A	H	R	T	P	E	I	H
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	I	L	E	S	L	E	T	A	I	I	T	L	S	K	D	G	R	I	T	E	W	N	K	K	A	E	Q	L	F	G	L	K	K	E	N	V	L	G	R	R	L	K	D	L	P	D	F	E	E	I	G	S	V	A	E	S	V	F	E	N	K	E	P	V	F	L	N	F	Y	K	F	G	E	R	Y	F	N	I
Template Known Secondary structure			S	S	G	G	G	S	S	S							S	S	S	B		S		B									S			S	T	T	T	T	T		B	S	T	T	S	T	T	T	T																							B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	L	V	I	P	L	W	E	K	G	V	V	T	G	T	L	K	I	Y	Y	C	H	A	H	Q	I	T	S	S	L	Q	E	M	A	V	G	L	S	Q	I	I	S	T	Q	L	E	V	S	R	A	E	Q	L	R	E	M	A	N	K	A	E	L	R	A	L	Q	S	K	I	N	P	H	F	L	F	N	A	L	N
Query Conservation
Alig confidence																																																																								.	.
Template Conservation																																																																								.	.
Template Sequence		R	F	S	P	F	R	N	A	K	T	Q	L	L	E	G	V	I	I	T	I	D	D	V	T	E	L	Y	K	Y	E	E	E	R	K	R	R	E	R	L	S	I	L	G	E	M	T	A	R	V	A	H	E	I	R	N	P	I	T	I	I	G	G	F	I	M	R	M	K	K	H	.	.	L	D	D	P	E	T	L	K
Template Known Secondary structure									T	T	T	T	S	S											S	T	T	T	T	T	T	T	T	T	T																																		T	T	S	.	.		S		S	S		T	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.			.	.	.	570	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	S	S	S	I	R	L	N	P	D	T	A	R	Q	L	I	F	N	L	S	R	Y	L	R	Y	N	I	E	L	K	D	D	E	Q	I	D	I	K	K	E	L	Y	Q	I	K	D	Y	I	A	I	E	Q	A	R	F	G	D	K	L	T	V	I	Y	D	I	D	E	E	V	N	C	C	I	P	S	L	L	I	Q
Query Conservation
Alig confidence																												.	.																																					.
Template Conservation																												.	.																																					.
Template Sequence		K	Y	I	N	I	I	T	N	E	L	S	R	L	E	T	I	V	K	E	I	L	E	Y	S	K	E	.	.	R	V	L	E	F	T	E	F	N	L	N	E	L	I	R	E	V	Y	V	L	F	E	E	K	I	R	K	M	N	I	D	F	C	F	E	T	.	D	N	E	D	L	R	V	E	A	D	R	T	R	I	K
Template Known Secondary structure																												.	.																										T	T	T	T								.	S		S
Template Predicted Secondary structure																												.	.																																					.
Template SS confidence
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600			.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.		.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		P	L	V	E	N	A	I	V	H	G	I	Q	P	C	K	G	K	G	V	V	T	I	S	V	A	E	C	G	N	R	V	R	I	A	V	R	D	T	G	H	G	I	D	P	K	V	I	E	R	V	E	A	N	E	M	P	G	N	K	I	G	L	L	N	V	H	H	R	V	K	.	L	L	Y	G	E	G	L	H	I
Query Conservation																																																																								.
Alig confidence																																																								.	.															.
Template Conservation																																																								.	.
Template Sequence		Q	V	L	I	N	L	V	Q	N	A	I	E	A	T	G	E	N	G	K	I	K	I	T	S	E	D	M	Y	T	K	V	R	V	S	V	W	N	S	G	P	P	I	P	E	E	L	K	E	K	I	F	S	P	F	.	.	F	T	T	L	G	L	S	I	C	R	K	I	I	E	D	E	H	G	G	K	I	W	T	E
Template Known Secondary structure									T					T	T		T	T											T	T										S					G	G	G	G	T	T	T	S	S	S		.	.							T									T	T		S	B
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.			.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	L	E	P	G	T	E	I	A	F	Y	I	P	N	Q	R	T	P
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		N	R	.	E	N	G	V	V	F	I	F	E	I	P	K	T	P	E	K
Template Known Secondary structure				.	S	S										S		T	T
Template Predicted Secondary structure				.
Template SS confidence
		737	.		.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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