Job Description P0ACT2 Confidence 99.88% Date Thu Jan 5 11:18:57 GMT 2012 Rank 25 Aligned Residues 192 % Identity 16% Template c3s5rA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator tetr family; PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	T	R	Q	E	L	I	E	T	A	I	A	Q	F	A	Q	H	G	V	S	K	T	T	L	N	D	I	A	D	A	A	N	V	T	R	G	A	I	Y	W	H	F	E	N	K	T	Q	L	F	N	E	M	W	L	Q	Q	P	S	L	R	E	L	I	Q	E	H	L	T	A	G	L	E	H	D	P	F	Q	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	T	R	E	L	L	L	D	A	A	T	T	L	F	A	E	Q	G	I	A	A	T	T	X	A	E	I	A	A	S	V	G	V	N	P	A	X	I	H	Y	Y	F	K	T	R	D	S	L	L	D	T	I	I	E	E	R	I	G	R	I	I	D	X	I	W	E	P	V	T	G	E	E	D	D	P	L	I	X	V
Template Known Secondary structure																					T	T	T									T	T	T											S	S												T										T	T			S			S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	K	L	I	V	G	L	Q	Y	I	A	K	I	P	R	Q	Q	A	L	L	K	I	L	Y	H	K	C	E	F	N	D	E	M	L	A	E	G	V	I	R	E	K	M	G	F	N	P	Q	T	L	R	E	V	L	Q	A	C	Q	Q	Q	G	C	V	A	N	N	L	D	L	D	V	V	M	I	I	I	D	G	A
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		R	D	L	V	N	R	I	V	N	T	C	E	T	X	L	W	L	P	S	L	W	I	R	E	.	.	.	I	V	N	E	G	G	A	L	R	E	K	X	L	N	N	I	P	I	D	K	X	N	K	F	S	A	K	I	A	E	G	Q	K	Q	G	V	I	N	S	G	I	D	S	R	L	L	I	G	S	I	I	G	L
Template Known Secondary structure																T										.	.	.	T	T	S	T	T		S	S						T	T																				T	S	S		T	T	S		T	T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		F	S	G	I	V	Q	N	W	L	M	.	.	.	.	.	N	M	A	G	Y	D	L	Y	K	Q	A	P	A	L	V	D	N	V	L	R	M	F	M	P	D
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.
Template Conservation
Template Sequence		T	X	L	P	L	A	T	A	K	L	R	D	Q	I	P	T	X	K	G	L	S	S	E	D	I	V	C	H	V	T	A	L	L	F	T	G	L	T	N	P
Template Known Secondary structure								T					T	T	S	G	G	G																		T		S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions