Job Description P0ACT2 Confidence 99.83% Date Thu Jan 5 11:18:57 GMT 2012 Rank 67 Aligned Residues 181 % Identity 15% Template c3qkxB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893; PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution Resolution 2.35 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	R	Q	E	L	I	E	T	A	I	A	Q	F	A	Q	H	G	V	S	K	T	T	L	N	D	I	A	D	A	A	N	V	T	R	G	A	I	Y	W	H	F	E	N	K	T	Q	L	F	N	E	M	W	L	Q	Q	P	S	L	R	E	L	I	Q	E	H	L	T	A	G	L	E	H	D	P	F	Q	Q	L	R
Query Conservation
Alig confidence																																																																				.
Template Conservation																																																																				.
Template Sequence		D	L	A	E	Q	I	F	S	A	T	D	R	L	X	A	R	E	G	L	N	Q	L	S	X	L	K	L	A	K	E	A	N	V	A	A	G	T	I	Y	L	Y	F	K	N	K	D	E	L	L	E	Q	F	A	H	R	V	F	S	X	F	X	A	T	L	E	K	.	D	F	D	E	T	K	P	F	F	E	Q	Y	R
Template Known Secondary structure																		S		G	G	G										T	T	S										S	S																						T	.	T			T	T	S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	I	V	G	L	Q	Y	I	A	K	I	P	R	Q	Q	A	L	L	K	I	L	Y	H	K	C	E	F	N	D	E	M	L	A	E	G	V	I	R	E	K	M	G	F	N	P	Q	T	L	R	E	V	L	Q	A	C	Q	Q	Q	G	C	V	A	N	N	L	D	L	D	V	V	M	I	I	I	D	G	A	F
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.																																	.
Template Conservation																									.	.	.	.	.	.	.	.	.																																	.
Template Sequence		Q	X	W	K	N	I	W	Y	F	L	Q	E	N	P	T	I	L	S	N	L	K	Q	Y	.	.	.	.	.	.	.	.	.	E	S	L	P	N	F	K	D	I	C	K	N	I	K	N	C	R	W	D	L	F	C	H	Q	A	Q	K	A	G	L	L	A	.	E	L	S	E	D	I	L	F	L	L	S	L	K	T	A
Template Known Secondary structure																									.	.	.	.	.	.	.	.	.	T	T	S	T	T							T			S													T	T		B		.	S	S									T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.										.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	I	V	Q	N	W	L	M	N	M	A	G	Y	D	L	Y	K	Q	A	P	A	L	V	D	N	V	L	R	M	F	M	P
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		I	N	L	A	S	D	A	K	F	I	D	F	D	L	K	.	P	E	I	L	E	S	V	I	E	R	S	W	R	A	I	Q	K
Template Known Secondary structure						S											.														T	T	B
Template Predicted Secondary structure																	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions