Job Description P0ACT2 Confidence 99.88% Date Thu Jan 5 11:18:57 GMT 2012 Rank 29 Aligned Residues 195 % Identity 14% Template c3gziA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution Resolution 2.05 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	R	T	K	A	E	A	L	K	T	R	Q	E	L	I	E	T	A	I	A	Q	F	A	Q	H	G	V	S	K	T	T	L	N	D	I	A	D	A	A	N	V	T	R	G	A	I	Y	W	H	F	E	N	K	T	Q	L	F	N	E	M	W	L	Q	Q	P	S	L	R	E	L	I	Q	E	H	L	T	A	G
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		V	G	R	P	S	G	D	T	.	.	Q	N	R	D	K	L	I	L	A	A	R	N	L	F	I	E	R	P	Y	A	Q	V	S	I	R	E	I	A	S	L	A	G	T	D	P	G	L	I	R	Y	Y	F	G	S	K	E	K	L	F	S	T	X	I	H	E	T	A	X	P	V	L	A	Q	L	H	K	A	R	R	E
Template Known Secondary structure										.	.																T	S			S												T	S		T								S	S																										T
Template Predicted Secondary structure										.	.
Template SS confidence
		8	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	H	D	P	F	Q	Q	L	R	E	K	L	I	V	G	L	Q	Y	I	A	K	I	P	R	Q	Q	A	L	L	K	I	L	Y	H	K	C	E	F	N	D	E	M	L	A	E	G	V	I	R	E	K	M	G	F	N	P	Q	T	L	R	E	V	L	Q	A	C	Q	Q	Q	G	C	V	A	N	N	L	D	L	D
Query Conservation
Alig confidence					.	.	.																													.	.
Template Conservation					.	.	.																													.	.
Template Sequence		T	R	Q	.	.	.	E	S	P	A	A	L	L	Q	T	Y	Y	S	V	X	S	K	H	P	H	F	P	R	L	X	L	R	I	A	.	.	G	L	D	Q	S	L	P	E	N	A	E	V	T	K	A	F	Y	E	V	V	N	F	E	N	I	A	I	F	Q	R	L	K	D	K	N	L	L	K	D	D	V	D	A	H
Template Known Secondary structure		S		T	.	.	.	T																S	T	T										.	.	T	S		T	T	S	G	G	G											G	G	G			T	T								T	T		B		T	T
Template Predicted Secondary structure					.	.	.																													.	.
Template SS confidence
		86	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																	.	.											.	.	.	.	.
Query SS confidence																	.	.											.	.	.	.	.
Query Sequence		V	V	M	I	I	I	D	G	A	F	S	G	I	V	Q	.	.	N	W	L	M	N	M	A	G	Y	D	.	.	.	.	.	L	Y	K	Q	A	P	A	L	V	D	N	V	L	R	M	F	M
Query Conservation																	.	.											.	.	.	.	.
Alig confidence																	.	.											.	.	.	.	.
Template Conservation
Template Sequence		C	A	Q	L	S	F	F	A	X	X	V	F	P	F	I	V	P	E	N	L	L	E	R	V	G	I	E	L	T	P	D	F	L	Q	L	L	A	E	Q	N	T	R	L	L	Q	R	G	L	X
Template Known Secondary structure																	S								T	T																								B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions