Job Description P0ACT2 Confidence 99.73% Date Thu Jan 5 11:18:57 GMT 2012 Rank 108 Aligned Residues 174 % Identity 16% Template c2zcmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:biofilm operon icaabcd hth-type negative transcriptional PDBTitle: crystal structure of icar, a repressor of the tetr family Resolution 1.33 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	E	L	I	E	T	A	I	A	Q	F	A	Q	H	G	V	S	K	T	T	L	N	D	I	A	D	A	A	N	V	T	R	G	A	I	Y	W	H	F	E	N	K	T	Q	L	F	N	E	M	W	L	Q	Q	P	S	L	R	E	L	I	Q	E	H	L	T	A	G	L	E	H	D	P	F	Q	Q	L	R	E	K
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.
Template Sequence		K	D	K	I	I	D	N	A	I	T	L	F	S	E	K	G	Y	D	G	T	T	L	D	D	I	S	K	S	V	N	I	K	K	A	S	L	Y	Y	H	Y	D	N	K	E	E	I	Y	R	K	S	V	E	N	C	F	N	Y	F	I	D	F	X	X	R	N	Y	S	.	.	.	.	.	.	.	.	.	I	D	G	L
Template Known Secondary structure																		T	T	T										T	T			G	G	G	G	G	G	T		S	S																						T				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.										.	70	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	G	L	Q	Y	I	A	K	I	P	R	Q	Q	A	L	L	K	I	L	Y	H	K	C	E	F	N	D	E	M	L	A	E	G	V	I	R	E	K	M	G	F	N	P	Q	T	L	R	E	V	L	Q	A	C	Q	Q	Q	G	C	V	A	N	N	L	D	L	D	V	V	M	I	I	I	D	G	A	F	S	G
Query Conservation
Alig confidence																		.	.	.	.																																												.	.
Template Conservation																		.	.	.	.																																												.	.
Template Sequence		Y	Q	F	L	F	K	F	I	F	D	V	D	E	R	Y	I	.	.	.	.	K	L	Y	V	Q	L	S	S	A	P	E	A	L	N	S	E	I	K	H	H	L	Q	E	I	N	T	T	L	H	D	E	L	I	K	Y	Y	D	P	T	H	I	A	L	.	.	D	K	E	D	F	I	N	X	I	L	X	F	L	E	T
Template Known Secondary structure												S						.	.	.	.					G	G	G	G	S		G	G	G																				G	G	G			T	T	T	B	S	S	.	.
Template Predicted Secondary structure																		.	.	.	.																																												.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	Q	N	W	L	M	N	M	A	G	Y	D	L	Y	K	Q	A	P	A	L	V	D	N	V	L	R	M	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	Y	F	R	A	S	F	S	Q	K	F	G	I	I	E	D	S	K	N	R	F	K	D	Q	V	Y	S	L	L
Template Known Secondary structure															G	G	G
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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