Job Description P0ACT2 Confidence 99.82% Date Thu Jan 5 11:18:57 GMT 2012 Rank 76 Aligned Residues 195 % Identity 15% Template c1t33B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family); PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2 Resolution 2.20 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		A	E	A	L	K	T	R	Q	E	L	I	E	T	A	I	A	Q	F	A	Q	H	G	V	S	K	T	T	L	N	D	I	A	D	A	A	N	V	T	R	G	A	I	Y	W	H	F	E	N	K	T	Q	L	F	N	E	M	W	L	Q	Q	P	S	L	R	E	L	I	Q	E	H	L	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																											.																																														.	.	.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence		T	K	G	E	Q	A	K	S	Q	L	I	A	A	A	L	A	Q	F	G	E	Y	G	L	H	A	.	T	T	R	D	I	A	A	L	A	G	Q	N	I	A	A	I	T	Y	Y	F	G	S	K	E	D	L	Y	L	A	C	A	Q	W	I	A	D	F	L	G	E	K	F	R	P	H	A	E	K	A	E	R	L	F	S
Template Known Secondary structure																							G	G	G	S	.										T	S		T							T		S																															T	T
Template Predicted Secondary structure																											.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	G	L	E	H	D	P	F	Q	Q	L	R	E	K	L	I	V	G	L	Q	Y	I	A	K	I	P	R	Q	Q	A	L	L	K	I	L	Y	H	K	C	E	F	N	D	E	M	L	A	E	G	V	I	R	E	K	M	G	F	N	P	Q	T	L	R	E	V	L	Q	A	C	Q	Q	Q	G	C	V	A	N	N	L
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		Q	P	A	P	D	R	D	A	I	R	E	L	I	L	L	A	C	K	N	M	I	M	L	L	T	Q	E	D	T	V	N	L	S	K	.	F	I	S	R	E	Q	L	S	P	T	S	A	Y	Q	L	V	H	E	Q	V	I	D	P	L	H	T	H	L	T	R	L	V	A	A	Y	T	G	C	D	A	N	D	T	R	M
Template Known Secondary structure		S	S	S																					T	T		G	G	G						.								S												T																	T			T	T	S
Template Predicted Secondary structure																																				.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		158	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure						.	.	.																									.	.	.	.	.	.
Query SS confidence						.	.	.																									.	.	.	.	.	.
Query Sequence		D	L	D	V	.	.	.	V	M	I	I	I	D	G	A	F	S	G	I	V	Q	N	W	L	M	N	M	A	G	Y	D	.	.	.	.	.	.	L	Y	K	Q	A	P	A	L	V	D	N	V	L	R	M	F	M	P
Query Conservation						.	.	.																									.	.	.	.	.	.
Alig confidence						.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	H	T	H	A	L	L	G	E	V	L	A	F	R	L	G	K	E	T	I	L	L	R	T	G	W	P	Q	F	D	E	E	K	A	E	L	I	Y	Q	T	V	T	C	H	I	D	L	I	L	H	G	L	T	Q
Template Known Secondary structure																		T									T		S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions