 |
Job Description | P0AA43 | Confidence | 98.96% | Date | Thu Jan 5 11:11:52 GMT 2012 |
Rank | 18 | Aligned Residues | 55 |
% Identity | 20% | Template | d1dm9a_ |
SCOP info | Alpha-L RNA-binding motif
| Alpha-L RNA-binding motif
| Heat shock protein 15 kD
|
Resolution | 2.00 |
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | |
. | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | R | L | D | K | F | I | A | Q | Q | L | G | V | . |
S | R | A | I | A | G | R | E | I | R | G | N | R | V | T | V | D | G | E | I | V | R | N | A | A | F | K | L | L | P | E | H | D | V | A | Y | D | G | N | P | L | A | Q |
Query Conservation |   |
|
|
|
|
|   |
|   |   |   |   |   |   | . |
|
|   |   |   |   |   |
|
|   |   |
|   |
|   |
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |
|   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |
|   |
|   |
|
|
|   |   |   | . |
|   |
|   |   |
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |
Template Sequence |   |
V | R | L | D | K | W | L | W | A | A | R | F | Y | K | T | R | A | L | A | R | E | M | I | E | G | G | K | V | H | Y | N | G | Q | R | S | . |
K | P | S | K | I | V | E | L | N | A | T | L | T | L | R | Q | G | N | D | E | R |
Template Known Secondary structure |   |
| B |  |  |  |  |  |  |  | T | T | S | S | S | S |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  | T | T |  |  |
| . |
| T | T |
| B |
|
| T | T |
|  |  |  |  |  |  | T | T |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |
| . |
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . |
  |
Send structure to FirstGlance for more viewing options
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|