Job Description P0AA43 Confidence 99.08% Date Thu Jan 5 11:11:52 GMT 2012 Rank 16 Aligned Residues 80 % Identity 21% Template c3bbnD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Resolution 9.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.													.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure															.																																												.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence															.																																												.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		M	R	L	D	K	F	I	A	Q	Q	L	G	V	.	S	R	A	I	A	G	R	E	I	R	G	N	R	V	T	V	D	G	E	I	V	R	N	A	A	F	K	L	L	P	E	H	D	V	A	Y	D	G	N	P	L	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	G	P	R	Y	F	M	L	N	.
Query Conservation															.																																												.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence															.																																												.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		M	R	L	D	N	I	L	F	R	L	G	M	A	P	T	I	P	G	A	R	Q	L	V	N	H	R	H	I	L	V	N	G	R	I	V	D	I	P	S	Y	R	C	K	P	Q	D	T	I	M	A	R	D	E	Q	K	S	I	A	L	I	Q	N	S	L	D	L	S	P	R	E	E	L	P	K	H	L	T	L	N	P
Template Known Secondary structure		S	B	T	T	T	T	T	T	T	T	T	S	S	S	S	S									T	T					T	T						T	T		B			T	T							S	S	T	T	S								S	S	S	T	T	T	S				T	T					T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
			67	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		F	P	Y	K	G	L	V	N	Q	I	I	D	S	K	W
Template Known Secondary structure		T	T	T						S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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