Job Description P0AA43 Confidence 7.89% Date Thu Jan 5 11:11:52 GMT 2012 Rank 96 Aligned Residues 36 % Identity 11% Template c2yujA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 Resolution UNK

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	A	A	V	G	N	H	V	V	E	L	H	R	E	R	I	G	G	I	T	L	D	A	D	L	A	P	G	E	Y	R	P	L	T	E	E	E	I	A	S	V
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		M	M	Q	N	L	L	L	E	E	G	G	L	V	Q	V	E	S	.	.	.	.	.	.	V	N	L	Q	V	A	T	Y	S	K	F	Q	P	Q	S	P	D	F	L
Template Known Secondary structure							T			T	T								.	.	.	.	.	.							S							S	S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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