Job Description P0AA43 Confidence 100.00% Date Thu Jan 5 11:11:52 GMT 2012 Rank 12 Aligned Residues 156 % Identity 17% Template c2i82D_ PDB info PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure Resolution 2.05 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.
Predicted Secondary structure																																	.																																										.	.
Query SS confidence																																	.																																										.	.
Query Sequence		D	G	N	P	L	A	Q	Q	H	G	P	R	Y	F	M	L	N	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H	.	P	T	V	L	Y	F	L	D	E	P	V	A	W	K	L	H	A	A	G	R	L	D	I	D	T	T	G	L	V	L	M	T	D	D	G	Q	W	S	H	R	I	.	.	T	S	P	R	H
Query Conservation																																	.																																										.	.
Alig confidence																																	.																																										.	.
Template Conservation
Template Sequence		E	P	W	L	V	I	L	Y	Q	D	D	H	I	X	V	V	N	K	P	S	G	L	L	S	V	P	G	R	L	E	E	H	K	D	S	V	X	T	R	I	Q	R	D	Y	P	Q	A	E	S	V	H	R	L	D	X	A	T	S	G	V	I	V	V	A	L	T	K	A	A	E	R	E	L	K	R	Q	F	R	E	R
Template Known Secondary structure		S	S									S	S								T	T	S	B	S	S			S	S	G	G	G			B						T	T	T	S	T	T				S	S				S	S									S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		911	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.													.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		H	C	E	K	T	Y	L	V	T	L	E	S	P	V	A	D	D	.	.	.	.	.	.	.	.	.	.	.	.	T	A	E	Q	F	A	K	G	V	Q	L	H	N	E	K	D	L	T	K	P	A	V	L	E	V	I	T	P	.	.	T	Q	V	R	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		E	P	K	K	Q	Y	V	A	R	V	W	G	H	P	S	P	A	E	G	L	V	D	L	P	L	I	C	D	W	P	N	R	P	K	Q	K	V	C	Y	E	T	G	K	P	A	Q	T	E	Y	E	V	V	E	Y	A	A	D	N	T	A	R	V	V	L	K	P	I	T	G	R	S	H	Q	L	R	V	H	X	L	A
Template Known Secondary structure			S										S			S	S	S												G	G	G	T	T						T	T	T		B													T	T	T									S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		991	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	N	H	V	V	E	L	H	R	E	R	I	G	G
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		L	G	H	P	I	L	G	D	R	.	.	F	Y	A	S
Template Known Secondary structure			T			B	T	T		T	.	.	T	T	S
Template Predicted Secondary structure											.	.
Template SS confidence
		1071	.	.	.	.	.	.	.	.			1080	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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