Job Description P0AA43 Confidence 98.33% Date Thu Jan 5 11:11:52 GMT 2012 Rank 29 Aligned Residues 143 % Identity 15% Template c2apoA_ PDB info PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex Resolution 1.95 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																																														.	.
Query SS confidence																																		.																																														.	.
Query Sequence		Y	F	M	L	N	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H	P	T	V	L	Y	F	L	D	E	P	V	A	W	.	K	L	H	A	A	G	R	L	D	I	D	T	T	G	L	V	L	M	T	D	D	G	Q	W	S	H	R	I	T	S	P	R	H	H	C	E	K	T	Y	L	V	T	L	E	S	.	.
Query Conservation																																		.																																														.	.
Alig confidence															.	.	.	.	.	.	.													.																							.	.																						.	.
Template Conservation															.	.	.	.	.	.	.																																				.	.
Template Sequence		V	V	V	V	D	K	P	R	G	P	T	S	H	.	.	.	.	.	.	.	E	V	S	T	W	V	K	K	I	L	N	L	D	K	A	G	H	G	G	T	L	D	P	K	V	T	G	V	L	P	V	A	L	E	R	.	.	A	T	K	T	I	P	M	W	H	I	P	P	K	E	Y	V	C	L	M	H	L	H	R
Template Known Secondary structure									S	S	S				.	.	.	.	.	.	.										T	T		S					S	S				T	T										G	G	.	.	G	G	G	G	G	G	G	T	T	S	S											S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.																																				.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.																												.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.																												.	.	.	.	.	.
Query Sequence		P	V	A	D	D	T	A	E	Q	F	A	K	G	V	Q	L	H	N	E	K	D	L	T	K	P	A	V	L	E	V	I	T	.	.	.	.	.	P	T	Q	V	R	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	V	G	N	H	V	.	.	.	.	.	.	V	E	L	H	R	E	R	I	G	G
Query Conservation																																		.	.	.	.	.																												.	.	.	.	.	.
Alig confidence														.	.																			.	.	.	.	.																												.	.	.	.	.	.
Template Conservation														.	.
Template Sequence		D	A	S	E	E	D	I	L	R	V	F	K	.	.	E	F	T	G	R	I	Y	Q	R	R	I	R	K	I	H	E	L	E	L	L	D	K	D	G	K	D	V	L	F	R	V	K	C	Q	S	G	T	Y	I	R	K	L	C	E	D	I	G	E	A	L	G	T	S	A	H	M	Q	E	L	R	R	T	K	S	G	C
Template Known Secondary structure														.	.			S																					T	T										T	T														T	T	S													T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		208	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	D	A	D	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	E	K	D	A	V	Y
Template Known Secondary structure				G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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