Job Description P0AA43 Confidence 96.89% Date Thu Jan 5 11:11:52 GMT 2012 Rank 40 Aligned Residues 133 % Identity 27% Template c1ze2B_ PDB info PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate Resolution 3.00 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		Y	F	M	L	N	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H	P	T	V	L	Y	F	L	D	E	P	V	A	W	.	K	L	H	A	A	G	R	L	D	I	D	T	T	G	L	V	L	M	T	D	D	G	Q	W	S	H	R	I	T	S	P	R	H	H	C	E	K	T	Y	L	V	T	L	E	S	P	V
Query Conservation																																		.
Alig confidence															.	.	.	.	.	.	.													.																							.	.
Template Conservation															.	.	.	.	.	.	.																																				.	.
Template Sequence		I	L	V	A	Y	K	P	K	G	P	T	S	H	.	.	.	.	.	.	.	D	V	V	D	E	V	R	K	K	L	K	T	R	K	V	G	H	G	G	T	L	D	P	F	A	C	G	V	L	I	I	G	V	N	Q	.	.	G	T	R	I	L	E	F	Y	K	D	L	K	K	V	Y	G	E	Y	D	Q	V	P	P
Template Known Secondary structure									S	S	S				.	.	.	.	.	.	.										T	T		S					S	S				S	S			B							G	G	.	.	G	G	T	T		G	G	G	S	S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.																																				.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		141	.	.											.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	D	.	.	.	.	.	.	.	.	.	.	T	A	E	Q	F	A	K	G	V	Q	L	H	N	E	K	D	L	T	K	P	A	V	L	E	V	I	T	P	T	Q	V	R	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	V	G	N	H	V	V	E	L	H	R	E	R	I	G	G	I	T	L
Query Conservation					.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Y	S	A	K	K	Y	K	G	E	R	L	Y	K	L	A	R	E	G	K	I	I	N	L	P	P	K	R	V	K	I	F	K	I	R	V	E	V	S	P	G	T	Y	I	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	S	V	G	P	H	T	I
Template Known Secondary structure		S	S		S		B	S	S	S	S	B								S																					T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B			S	S	S			S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.																										.	.	.	.	.	.	.	.	170
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	D	L	A	P	G	E	Y	R	P	L	T	E	E	E	I	A	S	V	V
Query Conservation
Alig confidence										.	.	.
Template Conservation										.	.	.
Template Sequence		E	E	S	L	N	V	F	E	.	.	.	A	A	P	E	E	I	E	N	R	I
Template Known Secondary structure		S	S	S			T	T	T	.	.	.									T
Template Predicted Secondary structure										.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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