Job Description P0AA43 Confidence 100.00% Date Thu Jan 5 11:11:52 GMT 2012 Rank 2 Aligned Residues 229 % Identity 58% Template c1vioA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Resolution 1.59 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	L	D	K	F	I	A	Q	Q	L	G	V	S	R	A	I	A	G	R	E	I	R	G	N	R	V	T	V	D	G	E	I	V	R	N	A	A	F	K	L	L	P	E	H	D	V	A	Y	D	G	N	P	L	A	Q	Q	H	G	P	R	Y	F	M	L	N	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H
Query Conservation
Alig confidence																																																																															.	.
Template Conservation																																																																															.	.
Template Sequence		L	R	L	D	K	F	I	A	E	N	V	G	L	T	R	S	Q	A	T	K	A	I	R	Q	S	A	V	K	I	N	G	E	I	V	K	S	G	S	V	Q	I	S	Q	E	D	E	I	Y	F	E	D	E	L	L	T	W	I	E	E	G	Q	Y	F	M	L	N	K	P	Q	G	C	V	C	S	N	D	D	.	.	Y
Template Known Secondary structure													T												T	T					T	T						T	T					T	T	S					T	T					S	S												T	T		B	S	S				.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	V	L	Y	F	L	D	E	P	V	A	W	K	L	H	A	A	G	R	L	D	I	D	T	T	G	L	V	L	M	T	D	D	G	Q	W	S	H	R	I	T	S	P	R	H	H	C	E	K	T	Y	L	V	T	L	E	S	P	V	A	D	D	T	A	E	Q	F	A	K	G	V	Q	L	H	N	E	K	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	I	Y	Q	F	F	D	Y	P	L	A	G	K	L	H	S	A	G	R	L	D	V	D	T	T	G	L	V	L	L	T	D	D	G	Q	W	S	H	R	I	T	S	P	K	H	H	C	E	K	T	Y	L	V	T	L	A	D	P	V	E	E	N	Y	S	A	A	C	A	E	G	I	L	L	R	G	E	K	E	P
Template Known Secondary structure			B	G	G	G	G	S		T	T	G	G	G	G				S	S				T	T									S											T	T	S											S	S				T	T												T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	P	A	V	L	E	V	I	T	P	T	Q	V	R	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	V	G	N	H	V	V	E	L	H	R	E	R	I	G	G	I	T	L	D	A	D	L	A	P	G	E	Y	R	P	L	T	E	E	E	I	A	S	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	P	A	K	L	E	I	L	D	D	Y	N	V	N	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	L	G	N	K	V	V	G	L	H	R	W	K	I	G	D	V	V	L	D	E	S	L	E	E	G	E	Y	R	P	L	T	Q	S	E	I	E	K	L	V
Template Known Secondary structure											S	S	S							S				T	T									T	T												T	T					T	T			T	T													T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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