Job Description P0AA43 Confidence 100.00% Date Thu Jan 5 11:11:52 GMT 2012 Rank 13 Aligned Residues 156 % Identity 23% Template c1qyuA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud Resolution 2.00 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																																		.												.	.	.	.	.																														.	.
Query SS confidence																																		.												.	.	.	.	.																														.	.
Query Sequence		D	G	N	P	L	A	Q	Q	H	G	P	R	Y	F	M	L	N	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H	P	.	T	V	L	Y	F	L	D	E	P	V	A	.	.	.	.	.	W	K	L	H	A	A	G	R	L	D	I	D	T	T	G	L	V	L	M	T	D	D	G	Q	W	S	H	R	I	.	.
Query Conservation																																		.												.	.	.	.	.																														.	.
Alig confidence																																		.												.	.	.	.	.																														.	.
Template Conservation
Template Sequence		D	I	P	L	D	I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L	H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	X	V	V	A	K	T	V	P	A	Q	T	R	L	V	E
Template Known Secondary structure												S	S								S	S			S	S		B	T	T	B	S	S	S	S										G	G	G	G	G	S	G	G	G	G	B		S				T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.											.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.																												.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.																												.
Query Sequence		T	S	P	R	H	H	C	E	K	T	Y	L	V	T	L	E	S	P	V	A	D	D	T	.	.	.	.	.	.	.	.	.	.	A	E	Q	F	A	K	G	V	Q	L	H	N	E	K	D	L	T	K	P	A	V	L	E	V	I	T	P	.	T	Q	V	R	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F
Query Conservation																									.	.	.	.	.	.	.	.	.	.																												.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																												.
Template Conservation
Template Sequence		S	L	Q	R	R	E	I	T	R	E	Y	E	A	V	A	I	G	H	X	T	A	G	G	T	V	D	E	P	I	S	R	H	P	T	K	R	T	H	X	A	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	X	E	H	F	R	V	H	T	R	L	R	L	R	L	E	T	G	R	T	H	Q	I	R	V	H	X
Template Known Secondary structure					T	T												S																S	S		T	T						T	T	S	B													S	S									S				T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	G	N	H	V	V	E	L	H	R	E	R	I	G	G
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		A	H	I	T	H	P	L	V	G	.	.	D	P	V	Y	G	G
Template Known Secondary structure				T	T			B	T	T	.	.		T	T	T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.			250	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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