Job Description P0AA43 Confidence 98.06% Date Thu Jan 5 11:11:52 GMT 2012 Rank 34 Aligned Residues 145 % Identity 18% Template c1k8wA_ PDB info PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna Resolution 1.85 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																																														.	.
Query SS confidence																																		.																																														.	.
Query Sequence		Y	F	M	L	N	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H	P	T	V	L	Y	F	L	D	E	P	V	A	W	.	K	L	H	A	A	G	R	L	D	I	D	T	T	G	L	V	L	M	T	D	D	G	Q	W	S	H	R	I	T	S	P	R	H	H	C	E	K	T	Y	L	V	T	L	E	S	.	.
Query Conservation																																		.																																														.	.
Alig confidence															.	.	.	.	.	.	.													.																							.	.																						.	.
Template Conservation															.	.	.	.	.	.	.																																				.	.
Template Sequence		V	L	L	L	D	K	P	Q	G	M	S	S	N	.	.	.	.	.	.	.	D	A	L	Q	K	V	K	R	I	Y	N	A	N	R	A	G	H	T	G	A	L	D	P	L	A	T	G	M	L	P	I	C	L	G	E	.	.	A	T	K	F	S	Q	Y	L	L	D	S	D	K	R	Y	R	V	I	A	R	L	G	Q
Template Known Secondary structure									T	T					.	.	.	.	.	.	.										T	T		S					S	S				T	T										G	G	.	.	G	G	G	G	T					T	S											T
Template Predicted Secondary structure															.	.	.	.	.	.	.																																				.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.								.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																			139	140	.	.	.	.	.	.	.	.																														.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	A	D	D	T	A	E	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	G	V	Q	L	H	N	E	K	D	L	T	K	P	A	V	L	E	V	I	T	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		R	T	D	T	S	D	A	D	G	Q	I	V	E	E	R	P	V	T	F	S	A	E	Q	L	A	A	A	L	D	T	F	R	G	D	I	E	Q	I	P	S	M	Y	S	A	L	K	Y	Q	G	K	K	L	Y	E	Y	A	R	Q	G	I	E	V	P	R	E	A	R	P	I	T	V	Y	E	L	L	F	I	R	H	E
Template Known Secondary structure				S	S	S	B	T	T	S																					T	T	S									S	S	S					T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		P	T	Q	V	R	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	V	G	N	H	V	.	.	.	.	.	.	V	E	L	H	R	E	R	I	G	G	I	T	L	D	A	D	L	A
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	E	L	E	L	E	I	H	C	S	K	G	T	Y	I	R	T	I	I	D	D	L	G	E	K	L	G	C	G	A	H	V	I	Y	L	R	R	L	A	V	S	K	Y	P	V	E	R	M	V	T
Template Known Secondary structure		T	T										T	T															T	S													T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions