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Job DescriptionP32721
Confidence100.00%DateThu Jan 5 11:50:44 GMT 2012
Rank9Aligned Residues460
% Identity22%Templatec2r6fA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:excinuclease abc subunit a; PDBTitle: crystal structure of bacillus stearothermophilus uvra
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50... .
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Query Sequence  TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG. . . . . . . . . . . . . . . . . . . . . . . . . . . . I
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Template Sequence  XDKIIVKGA. . . . . RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQXEKPDVDA
Template Known Secondary structure 

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SSS

STTSSTTSSTTTTTS
TS


S
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   1........ 10.........20.........30.........40.........50.........60.........70.....
 
   55....60.........70.........80.........90......... 100.........110.........120.........
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Query Sequence  HEPTKGTITINNISYNKLDHKLAAQLGIGIIYQELSVIDELTVLE. . . . . NLYIGRHLTKKICGVNIIDWREMRVRAAMM
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Template Conservation 
      
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Template Sequence  IEGLSPAISIDQ. . . . . . . . . . . . . . . . KTTSRNPRSTVG. TVTEIYDYLRLLFARIGRPICPTHGIEIQSQTIEQXVDR
Template Known Secondary structure  S


SS................TTS


TT
B.TST
B
TTT

B




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   76...80....... ..90......... 100.........110.........120.........130........
 
   130... ......140.........150.........160.........170.........180.........190.........
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Query Sequence  LLRV. . . . . . . . . . GLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV
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Template Sequence  LLSYPERTKXQILAPIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFSEKHACPYCGFSIGELEPRL
Template Known Secondary structure  TS
TT





STTTTSTTT

SS
TTT




GGG
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   139140.........150.........160.........170.........180.........190.........200.........210........
 
   200.........210.... .....220.........230.........240.........250....
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Query Sequence  YISHKLAEIRRICDR. . . . . . . . . . YTVMKDGSSVCSGIVSDVSNDDIVRLMVGRELQNRFNAMK. . . . . . . . . . . . . . .
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Template Conservation                    
   
              
                                          
Template Sequence  FSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKEHAIAPWEPYYPQLLEAVCRHYGIPXDVPVKDLPKEQLDKILYG
Template Known Secondary structure  G
SSSTTTB
TTTTS



SSS

BGGG
SSSSS





SS
BGGGS

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   265....270.........280.........290.........300.........310.........320.........330.........340....
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                 
                
Template Sequence  SGGEPIYFRYTNDFGQVREQYIAFEGVIPNVERRYRETSSDYIREQXEKYXAEQPCPTCQGYRLKKESLAVLVGGKHIGE
Template Known Secondary structure 
TT



B

B
SSS
B

B








TTGGG
TTTTTS
B
TTTTTSSS
B
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   349350.........360.........370.........380.........390.........400.........410.........420........
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation          
                              
    
           

         
            
Template Sequence  VTAXSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY
Template Known Secondary structure  TSB



ST
TTSBSSSBGGG

TT


S
Template Predicted Secondary structure 




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   429430.........440.........450.........460.........470.........480.........490.........500........
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation 

      
       
   
                  
         
                              
Template Sequence  VLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEVXNDPNSLTGQ
Template Known Secondary structure 
TTTT

GGGTTT



S
S
SSSGGG

S
TTTTTT
TT
TT
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   509510.........520.........530.........540.........550.........560.........570.........580........
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                 
  
                                             
Template Sequence  YLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGE
Template Known Secondary structure  TSS




SS




S

SSS

SSSS

B
TTSSTTT






S
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   589590.........600.........610.........620.........630.........640.........650.........660........
 
   255....260.........270.........280.........290.........300.........310......
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Query Sequence  . . . . . . . . . . . . . . . . . . ENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA
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Template Sequence  HRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIE
Template Known Secondary structure 
S
GGG
S
SS
S
SSTT

TTSTT

TTTT
TTSTTTB
TTTTT
S
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   669670.........680.........690.........700.........710.........720.........730.........740........
 
   317..320.........330.........340.........350.........360.........370.........380.........390......
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Query Sequence  GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL
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Template Sequence  XHFLPDVYVPCEVCH. . . . . GKRYNRETLEV. . . . TYKGKNIAEVLDXTVEDALDFFASIP. . . . . . . KIKRKLETLYDV
Template Known Secondary structure 
SSS


TTTT.....T

B
TTGGG
....
BTTB
TSBT
S
.......T
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   749750.........760... ......770.... .....780.........790.........800 .........810..
 
   397..400.........410.........420....... ..430.........440.........450.........460.........470...
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Query Sequence  ALKCHSVNQNITELSGGNQQKVLISKWLCCC. . . PEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEII
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Template Sequence  GLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK
Template Known Secondary structure  T
SSSBTT

GGG

SS


S

TTTT

TT



T
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   813......820.........830.........840.........850.........860.........870.........880.........890..
 
   474.....480.. .......490.........500.
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Query Sequence  TVCDRIAVF. . . . . . CEGRLTQILTNRDDMSEEE
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Template Conservation   . 
 
 

      
 
 


 
 
  
     
Template Sequence  T. ADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE
Template Known Secondary structure  T.
S
SSSTTS

SST
TT
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   893 ......900.........910.........920.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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