Job Description P32721 Confidence 100.00% Date Thu Jan 5 11:50:44 GMT 2012 Rank 12 Aligned Residues 296 % Identity 25% Template c2it1B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii Resolution 1.94 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	M	A	G	I	G	K	S	F	G	P	V	H	A	L	K	S	V	N	L	T	V	Y	P	G	E	I	H	A	L	L	G	E	N	G	A	G	K	S	T	L	M	K	V	L	S	G	I	H	E	P	T	K	G	T	I	T	I	N	N	I	S	Y	N	K	L	D	H	K	L	A	A	Q	L	G	I	G	I	I
Query Conservation
Alig confidence																																																																							.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		I	K	L	E	N	I	V	K	K	F	G	N	F	T	A	L	N	N	I	N	L	K	I	K	D	G	E	F	M	A	L	L	G	P	S	G	S	G	K	S	T	L	L	Y	T	I	A	G	I	Y	K	P	T	S	G	K	I	Y	F	D	E	K	D	V	T	E	L	P	P	.	.	.	K	D	R	N	V	G	L	V
Template Known Secondary structure												T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S			.	.	.				T
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	E	L	S	V	I	D	E	L	T	V	L	E	N	L	Y	I	G	R	H	L	T	K	K	I	C	G	V	N	I	I	D	W	R	E	M	R	V	R	A	A	M	M	L	L	R	V	G	L	K	V	D	L	D	E	K	V	A	N	L	S	I	S	H	K	Q	M	L	E	I	A	K	T	L	M	L	D	A	K
Query Conservation
Alig confidence																				.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		F	Q	N	W	A	L	Y	P	H	M	T	V	Y	K	N	I	A	F	.	.	.	.	.	.	.	P	L	E	L	R	K	A	P	R	E	E	I	D	K	K	V	R	E	V	A	K	M	L	H	I	D	K	L	L	N	R	Y	P	W	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	V	K	E	P	E
Template Known Secondary structure			T	T					T	T	S									.	.	.	.	.	.	.					T	T																	T	T		G	G	G	T	T	S		G	G	G	S															T	T			S
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.
Predicted Secondary structure																												.																																													.	.	.
Query SS confidence																												.																																													.	.	.
Query Sequence		V	I	I	M	D	E	P	T	S	S	L	T	N	K	E	V	D	Y	L	F	L	I	M	N	Q	L	.	R	K	E	G	T	A	I	V	Y	I	S	H	K	L	A	E	I	R	R	I	C	D	R	Y	T	V	M	K	D	G	S	S	V	C	S	G	I	V	S	D	V	S	N	D	.	.	.	D	I	V	R	L	M
Query Conservation																												.																																													.	.	.
Alig confidence																												.																																													.	.	.
Template Conservation
Template Sequence		V	L	L	L	D	E	P	L	S	N	L	D	A	L	L	R	L	E	V	R	A	E	L	K	R	L	Q	K	E	L	G	I	T	T	V	Y	V	T	H	D	Q	A	E	A	L	A	M	A	D	R	I	A	V	I	R	E	G	E	I	L	Q	V	G	T	P	D	E	V	Y	Y	K	P	K	Y	K	F	V	G	G	F
Template Known Secondary structure							S	G	G	G	G	S																				T								S										S							T	T														S		S	B
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.										.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.					.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																								.															.	.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																								.															.	.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		V	G	R	E	L	Q	N	R	F	N	A	M	K	E	N	V	S	N	L	A	H	E	.	T	V	F	E	V	R	N	V	T	S	R	D	R	K	.	.	.	.	.	.	.	.	.	K	V	R	D	I	S	F	S	V	C	R	G	E	I	L	G	F	A	G	.	.	.	.	L	V	G	S	G	R	T	E	L	M	N
Query Conservation																								.															.	.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence																								.															.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		L	G	N	P	P	M	N	F	V	E	A	K	V	E	D	G	K	L	V	I	T	E	K	S	K	L	P	I	P	K	Q	Y	V	E	I	V	K	E	T	G	I	T	E	V	I	I	G	F	R	P	H	D	A	E	I	V	K	G	E	G	E	G	I	V	G	E	V	Y	S	F	E	P	L	G	R	E	Q	I	V	T
Template Known Secondary structure		S	B	T	T	B										T	T				S	S	S	S							G	G	G								T										G	G	G						S	S		S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		308	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	V	N
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions