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Job DescriptionP32721
Confidence100.00%DateThu Jan 5 11:50:44 GMT 2012
Rank19Aligned Residues307
% Identity22%Templatec1q1bD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHKLAAQLGIGII
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Template Sequence  VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP. . . AERGVGMV
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TT

TT

SGGGSTTTSS


SSTT
TT

S...STT



B
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   4.....10.........20.........30.........40.........50.........60.........70.. .......80
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  YQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK
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Template Sequence  FQSYALYPHLSVAENMSF. . . . . . . GLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS
Template Known Secondary structure 
S




TTS
TTT.......TTTSSSSTTTTTTTTTGGGT
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GGGTTTSSSSTTTT

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   81........90........ .100.........110.........120.........130.........140.........150...
 
   166...170.........180.........190. ........200.........210.........220.........230.........240....
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Query Sequence  VIIMDEPTSSLTNKEVDYLFLIMNQL. RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRLMVGR
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Template Sequence  VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF
Template Known Secondary structure 
BSSTTTT

TTTTT

S

STT
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SB
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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   245....250.........260...... ...270.........280.........290.
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Query Sequence  ELQNRFNAMKENVSNLAHETVF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EVRNVTSRDRKKVRDISFSVCRGEI
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Template Sequence  IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNE
Template Known Secondary structure  SSSS

TT
SSTT


B

TT

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GGG
B
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   234.....240.........250.........260.........270.........280.........290.........300.........310...
 
   292.......300.........310.........320..
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Query Sequence  LGFAGLVGSGRTELMNCLFGVDKRAGGEIRL
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Template Sequence  TQIHIQIPSIRQNLVYRQNDVVLVEEGATFA
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TT
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   314.....320.........330.........340....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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