Job Description P39451 Confidence 100.00% Date Thu Jan 5 12:00:50 GMT 2012 Rank 38 Aligned Residues 308 % Identity 23% Template c2h6eA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-arabinose 1-dehydrogenase; PDBTitle: crystal structure of the d-arabinose dehydrogenase from sulfolobus2 solfataricus Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		M	K	A	A	V	V	T	K	D	H	H	V	D	V	T	Y	K	T	L	R	S	L	K	H	G	E	A	L	L	K	M	E	C	C	G	V	C	H	T	D	L	H	V	K	N	G	D	F	.	.	.	G	D	K	T	G	V	I	L	G	H	E	G	I	G	V	V	A	E	V	G	P	G	V	T	S	L	K	P	G
Query Conservation																																																		.	.	.
Alig confidence												.	.	.	.																																			.	.	.																					.
Template Conservation												.	.	.	.																																																										.
Template Sequence		S	K	A	A	L	L	K	K	F	S	.	.	.	.	E	D	V	N	I	P	E	P	Q	G	E	E	V	L	I	R	I	G	G	A	G	V	C	R	T	D	L	R	V	W	K	G	V	E	A	K	Q	G	F	R	L	P	I	I	L	G	H	E	N	A	G	T	I	V	E	V	G	.	E	L	A	K	V	K	K	G
Template Known Secondary structure				B					S			.	.	.	.										T	T																				T	T	S				T	T			S	S																.	T	T					T	T
Template Predicted Secondary structure												.	.	.	.																																																										.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	R	A	S	V	A	W	F	Y	E	G	C	G	H	C	E	Y	C	N	S	G	N	E	T	L	C	R	S	V	K	N	A	G	Y	S	V	D	G	G	M	A	E	E	C	I	V	V	A	D	Y	A	V	K	V	P	D	G	L	D	S	A	A	A	S	S	I	T	C	A	G	V	T	T	Y	K	A	V	K	L	.
Query Conservation																																																																																	.
Alig confidence																							.																																																										.
Template Conservation																							.
Template Sequence		D	N	V	V	V	Y	A	T	W	G	D	L	T	C	R	Y	C	R	E	G	K	.	F	N	I	C	K	N	Q	I	I	P	G	Q	T	T	N	G	G	F	S	E	Y	M	L	V	K	S	S	R	W	L	V	K	L	N	S	L	S	P	V	E	A	A	P	L	A	D	A	G	T	T	S	M	G	A	I	R	Q	A
Template Known Secondary structure								S		B			S		S	T	T	G	G	G	T		.	G	G	G		T	T		B		B	T	T	T	B			S	S	B	S					S		G	G	G					S	S	S						G	G	G	G	T
Template Predicted Secondary structure																							.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
					157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.																																.
Query SS confidence		.	.	.																																.
Query Sequence		.	.	.	S	K	I	R	P	G	Q	W	I	A	I	Y	G	L	G	G	L	G	N	L	A	L	Q	Y	A	K	N	V	F	N	A	.	K	V	I	A	I	D	V	N	D	E	Q	L	K	L	A	T	E	M	G	A	D	L	A	I	N	S	H	T	E	D	A	A	K	I	V	Q	E	K	T	G	G	A	H	A	A
Query Conservation		.	.	.																																.
Alig confidence		.	.	.																																.
Template Conservation
Template Sequence		L	P	F	I	S	K	F	A	E	P	V	V	I	V	N	G	I	G	G	L	A	V	Y	T	I	Q	I	L	K	A	L	M	K	N	I	T	I	V	G	I	S	R	S	K	K	H	R	D	F	A	L	E	L	G	A	D	Y	V	S	E	M	K	D	A	E	S	L	I	N	K	L	T	D	G	L	G	A	S	I	A
Template Known Secondary structure						T	T		S	S									S															T	T								S												T		S																	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	T	A	V	A	K	A	A	F	N	S	A	V	D	A	V	R	A	G	G	R	V	V	A	V	G	L	P	P	E	S	M	S	L	D	I	P	R	L	V	L	D	G	I	E	V	V	G	S	L	V	G	T	R	Q	D	L	T	E	A	F	Q	F	A	A	E	G	K	V	V	P	K	V	A	L	R	P	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	L	V	G	T	E	E	T	T	Y	N	L	G	K	L	L	A	Q	E	G	A	I	I	L	V	G	M	E	G	K	R	V	S	L	E	A	F	D	T	A	V	W	N	K	K	L	L	G	S	N	Y	G	S	L	N	D	L	E	D	V	V	R	L	S	E	S	G	K	I	K	P	Y	I	I	K	V	P	L	G
Template Known Secondary structure				S	S																										S	S												T	T								S															T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		313	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		339	340

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions