Phyre 2 alignment of P39451 with c1y9eB

Job Description P39451
Confidence 100.00% Date Thu Jan 5 12:00:50 GMT 2012

Rank 47 Aligned Residues 310

% Identity 18% Template c1y9eB_

PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein yhfp; PDBTitle: crystal structure of bacillus subtilis protein yhfp with2 nad bound

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure												.	.	.																																							.	.
Query SS confidence												.	.	.																																							.	.
Query Sequence	M	K	A	A	V	V	T	K	D	H	H	.	.	.	V	D	V	T	Y	K	T	L	R	S	L	K	H	G	E	A	L	L	K	M	E	C	C	G	V	C	H	T	D	L	H	V	K	N	G	D	F	G	.	.	D	K	T	G	V	I	L	G	H	E	G	I	G	V	V	A	E	V	G	P	G	V	T	S	L	K
Query Conservation												.	.	.																																							.	.
Alig confidence												.	.	.																																							.	.																		.	.
Template Conservation																																																																								.	.
Template Sequence	F	Q	A	L	Q	A	E	K	N	A	D	D	V	S	V	H	V	K	T	I	S	T	E	D	L	P	K	D	G	V	L	I	K	V	A	Y	S	G	I	N	Y	K	D	G	L	A	G	K	A	G	G	N	I	V	R	E	Y	P	L	I	L	G	I	D	A	A	G	T	V	V	S	.	.	S	N	D	P	R	F	A
Template Known Secondary structure			B							T	T					B						G	G	G	S		S	S	S																			S	T	T		S				S	S						S								S	.	.		S		T	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.

	76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence	P	G	D	R	A	S	V	A	W	F	Y	E	G	C	G	H	C	E	Y	C	N	S	G	N	E	T	L	C	R	S	V	K	N	A	G	Y	S	V	D	G	G	M	A	E	E	C	I	V	V	A	D	Y	A	V	K	V	P	D	G	L	D	S	A	A	A	S	S	I	T	C	A	G	V	.	.	.	.	T	T	Y
Query Conservation																																																																										.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	G	D	E	V	I	A	T	S	Y	E	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	R	D	G	G	L	S	E	Y	A	S	V	P	G	D	W	L	V	P	L	P	Q	N	L	S	L	K	E	A	X	V	Y	G	T	A	G	F	T	A	A	L	S	V	H
Template Known Secondary structure	T	T							S	T	T	B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	B			S	S	B	S						G	G	G						T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	83	.	.	.	.	.	.	90	.	.	.	.	.																							.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	A	V	K	L	S	K	I	R	P	G	Q	W	I	A	I	Y	G	L	G	G	L	G	N	L	A	L	Q	Y	A	K	N	V	F	N	A	K	V	I	A	I	D	V	N	D	E	Q	L	K	L	A	T	E	M	G	A	D	L	A	I	N	S	H	T	E	D	A	A	K	I	V	Q	E	K	T	G	G	A	H	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	L	E	Q	N	G	L	S	P	E	K	G	S	V	L	V	T	G	A	T	G	G	V	G	G	I	A	V	S	X	L	N	K	R	G	Y	D	V	V	A	S	T	G	N	R	E	A	A	D	Y	L	K	Q	L	G	A	S	E	V	I	S	R	E	D	V	Y	D	G	T	L	K	A	L	S	K	Q	Q	W	Q	G
Template Known Secondary structure				T	T	T			T	T	S						S	S	T	T	S													T	T								S		T	T	T							T	T		S									S	S	S				S	S						S
Template Predicted Secondary structure
Template SS confidence
	141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.							.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence	A	V	V	T	A	V	A	K	A	A	F	N	S	A	V	D	A	V	R	A	G	G	R	V	V	A	V	G	L	P	P	E	S	M	S	L	D	I	P	R	L	V	L	D	G	I	E	V	V	G	S	L	V	G	T	.	.	.	.	.	.	R	Q	D	L	T	E	A	F	Q	F	A	A	E	G	K	V	V	P	K
Query Conservation																																																								.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.
Template Conservation
Template Sequence	A	V	D	P	V	G	G	K	Q	L	A	S	L	L	S	K	I	Q	Y	G	G	S	V	A	V	S	G	L	T	G	G	G	E	V	P	A	T	V	Y	P	F	I	L	R	G	V	S	L	L	G	I	D	S	V	Y	C	P	X	D	V	R	A	A	V	W	E	R	X	S	S	D	L	K	P	D	Q	L	L	T	I
Template Known Secondary structure				S											T	T			T	T									T	T		S						S															S	T	T													T	T	T	T	T			S		S	G	G	G
Template Predicted Secondary structure
Template SS confidence
	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	306		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence	V	.	A	L	R	P	L	A	D	I	N	T	I	F	T	E	M	E	E	G	K	I	R	G	R	M	V	I	D	F
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence	V	D	R	E	V	S	L	E	E	T	P	G	A	L	K	D	I	L	Q	N	R	I	Q	G	R	V	I	V	K	L
Template Known Secondary structure							S	T	T								S	S	S	S			S	S					B
Template Predicted Secondary structure
Template SS confidence
	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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