Job Description Q46856 Confidence 100.00% Date Thu Jan 5 12:35:16 GMT 2012 Rank 17 Aligned Residues 330 % Identity 17% Template c3okfA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure													.	.	.																				.																										.	.					.	.
Query SS confidence													.	.	.																				.																										.	.					.	.
Query Sequence		M	N	N	F	N	L	H	T	P	T	R	.	.	.	I	L	F	G	K	G	A	I	A	G	L	R	E	Q	I	P	H	D	A	.	R	V	L	I	T	Y	G	G	G	S	V	K	K	T	G	V	L	D	Q	V	L	D	A	L	K	.	.	G	M	D	V	.	.	L	E	F	G	G	I	E	P	N	P	A	Y	E
Query Conservation													.	.	.																				.																										.	.					.	.
Alig confidence													.	.	.																				.																.	.									.	.					.	.
Template Conservation																																																			.	.
Template Sequence		M	E	R	I	T	V	N	L	G	E	R	S	Y	P	I	S	I	G	A	G	L	F	A	N	P	A	L	L	S	L	S	A	K	Q	K	V	V	I	V	T	N	H	T	V	A	P	L	Y	A	.	.	P	A	I	I	S	L	L	D	H	I	G	C	Q	H	A	L	L	E	L	P	D	G	E	Q	Y	K	T	L	E
Template Known Secondary structure										G	G	G								T	T	G	G	G		G	G	G	G				T	T									T	T	T						.	.											T										S	S	G	G	G		B
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																																																						.	.
Query SS confidence																.	.	.																																																						.	.
Query Sequence		T	L	M	N	A	V	K	L	V	R	E	Q	K	V	.	.	.	T	F	L	L	A	V	G	G	G	S	V	L	D	G	T	K	F	I	A	A	A	A	N	Y	P	E	N	I	D	P	W	H	I	L	Q	T	G	G	K	E	I	K	S	A	I	P	M	G	C	V	L	T	L	.	.	P	A	T	G	S	E	S	N
Query Conservation																.	.	.																																																						.	.
Alig confidence																.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	N	T	V	M	S	F	L	L	E	H	N	Y	S	R	D	V	V	V	I	A	L	G	G	G	V	I	G	D	L	V	G	F	A	A	A	C	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	G	V	D	F	I	Q	I	P	T	T	L	L	S	Q	V	D	S	S	V	G
Template Known Secondary structure													T	T			T	T								S														G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G										S							T	S	S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	V	I	S	R	K	T	T	G	D	K	Q	A	F	H	S	A	H	V	Q	P	V	F	A	V	L	D	P	V	Y	T	Y	T	L	P	P	R	Q	V	A	N	G	V	V	D	A	F	V	H	T	V	E	Q	Y	V	T	K	P	V	D	A	K	I	Q	D	R	F	A	E	G	I	L	L	T	L	I	E	D
Query Conservation
Alig confidence																					.	.	.																																							.	.	.
Template Conservation																					.	.	.																																							.	.	.
Template Sequence		G	K	T	A	V	N	H	P	L	G	K	N	M	I	G	A	F	Y	Q	.	.	.	P	K	A	V	V	I	D	T	D	C	L	T	T	L	P	A	R	E	F	A	A	G	M	A	E	V	I	K	Y	G	I	I	Y	D	S	A	F	F	.	.	.	D	W	L	E	A	Q	M	E	A	L	Y	A	L	D	E	Q	A
Template Known Secondary structure									T	T											.	.	.		S						G	G	G	G	G	G	S																			T						.	.	.												T	T
Template Predicted Secondary structure																					.	.	.																																							.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		G	P	K	A	L	K	E	P	E	N	Y	D	V	R	A	N	V	M	W	A	A	T	Q	A	L	N	G	L	I	G	A	G	V	P	Q	D	W	A	T	H	M	L	G	H	E	L	.	.	.	T	A	M	H	G	L	D	H	A	Q	T	L	A	I	V	L	P	A	L	W	N	E	K	R	D	T	K	R	A	K	L
Query Conservation																																																.	.	.
Alig confidence								.	.																									.	.	.	.	.	.	.								.	.	.																											.	.	.	.	.
Template Conservation								.	.																									.	.	.	.	.	.	.																																					.	.	.	.	.
Template Sequence		L	T	Y	A	I	A	.	.	R	C	C	Q	I	K	A	E	V	V	A	Q	D	E	K	G	I	R	A	L	L	N	L	G	.	.	.	.	.	.	.	H	T	F	G	H	A	I	E	A	H	M	G	Y	G	N	W	L	H	G	E	A	V	S	A	G	T	V	M	A	A	K	T	A	Q	L	Q	.	.	.	.	.
Template Known Secondary structure								.	.																	G	G	G	G	G	G	T	T	.	.	.	.	.	.	.													T	T	T	S																				T	.	.	.	.	.
Template Predicted Secondary structure								.	.																									.	.	.	.	.	.	.																																					.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	Y	A	E	R	V	W	N	I	T	E	G	S	D	D	E	R	I	D	A	A	I	A	A	T	R	N	F	F	E	Q	L	G	V	P	T	H	L	S	D	Y	G	L	D	G	S	S	I	P	A	L	L	K	K	L	E	E	H	G	M	T	Q	L	G	E	N	H	D	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	I	D	A	S	Q	F	E	R	I	L	A	I	L	K	K	A	H	L	P	V	R	T	P	E	.	N	M	T	F	A	D	F	M	Q	H	M	M	R	D	K	K	V	L	A	G	E	L	R	L	V	L	P	T	S	I	G	T	S	A	V	V	K	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S															T	T				S			T	.	T											T	G	G	G	T			T	T										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
																	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		374	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	D	V	S	R	R	I	Y	E	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	E	A	V	I	A	Q	A	I	E	Y	C	R
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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