Job Description Q46856 Confidence 51.96% Date Thu Jan 5 12:35:16 GMT 2012 Rank 96 Aligned Residues 86 % Identity 13% Template c3lopA_ PDB info PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		I	A	G	L	R	E	Q	I	P	H	D	A	.	.	R	V	L	I	T	Y	G	G	G	S	V	K	K	T	G	V	L	D	Q	V	L	D	A	L	K	G	M	D	V	L	E	F	G	G	I	E	P	N	P	A	Y	E	T	L	M	N	A	V	K	L	V	R	E	Q	K	V	T	F	L	L	A	V	G	G	G	S
Query Conservation														.	.
Alig confidence														.	.															.
Template Conservation																														.
Template Sequence		I	D	K	X	I	T	A	L	V	T	I	G	V	T	R	I	G	V	L	Y	Q	E	D	A	L	G	K	E	.	A	I	T	G	V	E	R	T	L	K	A	H	A	L	A	I	T	A	X	A	S	Y	P	R	N	T	A	N	V	G	P	A	V	D	K	L	L	A	A	D	V	Q	A	I	F	L	G	A	T	A	E
Template Known Secondary structure												T	T										T	T						.											T	T	T				S							T	T	S													S			S						S
Template Predicted Secondary structure																														.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	D	G	T	K	F	I	A	A	A
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	P	A	A	Q	F	V	R	Q	Y
Template Known Secondary structure		.	.
Template Predicted Secondary structure		.	.
Template SS confidence
				238	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions