Job Description Q46856 Confidence 100.00% Date Thu Jan 5 12:35:16 GMT 2012 Rank 20 Aligned Residues 323 % Identity 15% Template c2gruB_ PDB info PDB header:lyase Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase; PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+ Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																						.	.																										.	.	.
Query SS confidence																						.	.																										.	.	.
Query Sequence		R	I	L	F	G	K	G	A	I	A	G	L	R	E	Q	I	P	H	D	A	.	.	R	V	L	I	T	Y	G	G	G	S	V	K	K	T	G	V	L	D	Q	V	L	D	A	L	K	.	.	.	G	M	D	V	L	E	F	G	G	I	E	P	N	P	A	Y	E	T	L	M	N	A	V	K	L	V	R	E	Q	K
Query Conservation																						.	.																										.	.	.
Alig confidence																						.	.														.	.											.	.	.
Template Conservation																																					.	.
Template Sequence		N	F	A	F	G	E	H	V	L	E	S	V	E	S	Y	I	P	R	D	E	F	D	Q	Y	I	M	I	S	D	S	G	V	P	D	S	.	.	I	V	H	Y	A	A	E	Y	F	G	K	L	A	P	V	H	I	L	R	F	Q	G	G	E	E	Y	K	T	L	S	T	V	T	N	L	Q	E	R	A	I	A	L	G
Template Known Secondary structure							T	T		G	G	G	G	G	G	T	S		S	S	S		S								T	T	S				.	.										T	T	T	S										S	G	G	G		B														T	T
Template Predicted Secondary structure																																					.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		86	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		V	T	.	.	.	F	L	L	A	V	G	G	G	S	V	L	D	G	T	K	F	I	A	A	A	A	N	Y	P	E	N	I	D	P	W	H	I	L	Q	T	G	G	K	E	I	K	S	A	I	P	M	G	C	V	L	T	L	P	A	T	G	S	E	S	N	A	G	A	V	I	S	R	K	T	T	G	D	K	Q	A
Query Conservation				.	.	.
Alig confidence				.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	R	R	T	A	I	V	A	V	G	G	G	L	T	G	N	V	A	G	V	A	A	G	M	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	G	I	A	L	I	H	V	P	T	T	F	L	A	A	S	D	S	V	L	S	I	K	Q	A	V	N	L	T	S	G	K	N	L
Template Known Secondary structure				T	T								S														G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G										S						T	T	T	S	S								T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	S	A	H	V	Q	P	V	F	A	V	L	D	P	V	Y	T	Y	T	L	P	P	R	Q	V	A	N	G	V	V	D	A	F	V	H	T	V	E	Q	Y	V	T	K	P	V	D	A	K	I	Q	D	R	F	A	E	G	I	L	L	T	L	I	E	D	G	P	K	A	L	K	E	P	E	N	Y	D	V	R	A
Query Conservation
Alig confidence						.																																									.	.	.
Template Conservation						.																																									.	.	.
Template Sequence		V	G	F	Y	.	Y	P	P	R	F	V	F	A	D	T	R	I	L	S	E	S	P	P	R	Q	V	K	A	G	M	C	E	L	V	K	N	M	L	I	L	E	N	D	N	K	.	.	.	E	F	T	E	D	D	L	N	S	A	N	V	Y	S	P	K	Q	L	E	T	F	I	N	F	C	I	S	A	K	M	S	V
Template Known Secondary structure						.				S											T	S																			S			S			.	.	.	S	S		G	G	G			S	S
Template Predicted Secondary structure						.																																									.	.	.
Template SS confidence
		153	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		N	V	M	W	A	A	T	Q	A	L	N	G	L	I	G	A	G	V	P	Q	D	W	A	T	H	M	L	.	.	.	.	G	H	E	L	T	A	M	H	G	L	D	H	A	Q	T	L	A	I	V	L	P	A	L	W	N	E	K	R	D	T	K	R	A	K	L	L	Q	Y	A	E	R	V	W	N	I	T	E	G	S
Query Conservation																													.	.	.	.
Alig confidence																			.	.	.								.	.	.	.
Template Conservation																			.	.	.
Template Sequence		L	S	E	D	I	Y	E	K	K	K	G	L	I	F	E	Y	G	.	.	.	H	T	I	G	H	A	I	E	L	A	E	Q	G	G	I	T	H	G	E	A	I	A	V	G	M	I	Y	A	A	K	I	A	N	R	M	N	L	M	P	E	H	D	V	S	A	H	Y	W	L	L	N	K	I	G	A	L	Q	D	I	P
Template Known Secondary structure			T	T		T	T	S	S	S	G	G	G	G	G	G	T	T	.	.	.											T	T	T	S	S																				T	T	S	S															T	T	T	T	S	S
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.											.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.															.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.															.	.	.
Query Sequence		D	D	E	R	I	D	A	A	I	A	A	T	R	N	.	.	.	.	.	.	.	.	.	.	F	F	E	Q	L	G	V	P	T	H	L	S	D	Y	.	.	.	G	L	D	G	S	S	I	P	A	L	L	K	K	L	E
Query Conservation																.	.	.	.	.	.	.	.	.	.															.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		L	K	S	D	P	D	S	I	F	H	Y	L	I	H	D	N	D	E	D	N	L	G	M	I	L	L	S	G	V	G	K	P	A	M	Y	N	Q	T	L	L	T	P	V	R	K	T	L	I	K	E	V	I	R	E	G	L
Template Known Secondary structure				S																S										T	T					B	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions