Job Description Q46856 Confidence 100.00% Date Thu Jan 5 12:35:16 GMT 2012 Rank 16 Aligned Residues 295 % Identity 20% Template c1xahA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+ Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	T	R	I	L	F	G	K	G	A	I	A	G	L	R	E	Q	I	P	H	D	A	R	V	L	I	T	Y	G	G	G	S	V	K	K	T	G	V	L	D	Q	V	L	D	A	L	K	G	M	D	V	L	E	F	G	G	I	E	P	N	P	A	Y	E	T	L	M	N	A	V	K	L	V	R	E	Q	K	V	T
Query Conservation
Alig confidence																																						.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.
Template Sequence		N	N	Y	P	I	Y	V	E	H	G	A	I	K	Y	I	G	T	Y	L	N	Q	F	D	Q	S	F	L	L	I	D	E	Y	V	N	Q	Y	.	.	.	.	.	.	F	A	N	K	F	D	N	V	H	K	V	I	I	P	A	G	E	K	T	K	T	F	E	Q	Y	Q	E	T	L	E	Y	I	L	S	H	H	V	T
Template Known Secondary structure										T	T	G	G	G							T	T		S														.	.	.	.	.	.															S	G	G	G	G		S													T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
					88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.	.																																																					.
Query SS confidence		.	.	.																																																					.
Query Sequence		.	.	.	F	L	L	A	V	G	G	G	S	V	L	D	G	T	K	F	I	A	A	A	A	N	Y	P	E	N	I	D	P	W	H	I	L	Q	T	G	G	K	E	I	K	S	A	I	P	M	G	C	V	L	T	L	.	P	A	T	G	S	E	S	N	A	G	A	V	I	S	R	K	T	T	G	D	K	Q	A	F
Query Conservation		.	.	.																																																					.
Alig confidence		.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	T	A	I	I	A	V	G	G	G	A	T	G	D	F	A	G	F	V	A	A	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	G	V	H	F	I	Q	V	P	T	T	I	L	A	H	D	S	S	V	G	G	K	V	G	I	N	S	K	Q	G	K	N	L	I	G	A
Template Known Secondary structure		T	T								S														G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G										S	T	T					T	S	S								S	S	S	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		H	S	A	H	V	Q	P	V	F	A	V	L	D	P	V	Y	T	Y	T	L	P	P	R	Q	V	A	N	G	V	V	D	A	F	V	H	T	V	.	.	.	E	Q	Y	V	T	K	P	V	D	A	K	I	Q	D	R	F	A	E	G	I	L	L	T	L	I	E	D	G	P	K	A	L	K	E	P	E	N	Y	D	V
Query Conservation																																							.	.	.
Alig confidence					.	.	.																																.	.	.										.
Template Conservation					.	.	.																																												.
Template Sequence		F	Y	R	.	.	.	P	T	A	V	I	Y	D	L	D	F	L	K	T	L	P	F	K	Q	I	L	S	G	Y	A	E	V	Y	K	H	A	L	L	N	G	E	S	A	T	Q	D	I	E	Q	.	H	F	K	D	R	E	I	L	Q	S	L	N	G	M	D	K	Y	I	A	K	G	I	E	T	K	L	D	I	V	V
Template Known Secondary structure					.	.	.		S						G	G	G	G	G	G																															.		S		S							T	T	T
Template Predicted Secondary structure					.	.	.																																												.
Template SS confidence
		151	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	N	V	M	W	A	A	T	Q	A	L	N	G	L	I	G	A	G	V	P	Q	D	W	A	T	H	M	L	G	H	E	L	T	A	M	H	G	L	D	H	A	Q	T	L	A	I	V	L	P	A	L	W	N	E	K	R	D	T	K	R	A	K	L	L	Q	Y	A	E	R	V	W	N	I	T	E	G	S	D	D
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		A	.	.	.	.	.	.	.	.	.	.	.	D	E	K	E	Q	G	V	R	K	F	L	N	L	G	H	T	F	G	H	A	V	E	Y	Y	H	K	I	P	H	G	H	A	V	M	V	G	I	I	Y	Q	F	I	.	.	.	.	.	.	.	.	.	.	.	.	V	A	N	A	L	F	D	S	K	H	D	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	S	T	T	S	S	S	G	G	G	G	G	G	T	T	T																												.	.	.	.	.	.	.	.	.	.	.	.						T						.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
		227												.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.													270	.	.	.	.	.	.	.	.	.	280
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.							.	.	.	.	.							.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.						.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.						.	.	.	.	.	.
Query Sequence		E	R	I	D	A	A	I	A	A	T	R	N	F	F	E	Q	L	G	V	P	T	H	.	.	.	.	.	.	L	S	D	Y	G	.	.	.	.	.	.	L	D	G	S	S	I	P	A	L	L	K	K	L	E	E	H
Query Conservation																								.	.	.	.	.	.						.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	I	S	H	Y	I	Q	Y	L	I	Q	L	G	Y	P	L	D	G	V	Q	M	V	L	M	R	Q	F	G	D	I	V	V	Q	H	V	D	Q	L	T	L	Q	H	A	C	E	Q	L	K	T	Y
Template Known Secondary structure		.	.	.	.	.	.												T						B								T	T							B
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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