Job Description P37640 Confidence 99.91% Date Thu Jan 5 11:56:12 GMT 2012 Rank 6 Aligned Residues 189 % Identity 15% Template c3q9sA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	V	M	F	D	R	Q	S	I	F	I	H	G	M	K	I	S	L	Q	Q	R	I	P	G	V	S	I	Q	G	A	S	Q	A	D	E	L	W	Q	K	L	E	S	Y	P	E	A	L	V	M	L	D	G	D	Q	D	G	E	F	C	Y	W	L	L	Q	K	T	V	V	Q	F	P	E	V	K	V	L	I	T	A
Query Conservation
Alig confidence																								.	.																																														.
Template Conservation																								.	.																																														.
Template Sequence		R	I	L	V	I	E	D	D	H	D	I	A	N	V	L	R	X	D	L	T	D	A	.	.	G	Y	V	V	D	H	A	D	S	A	X	N	G	L	I	K	A	R	E	D	H	P	D	L	I	L	L	D	L	G	L	P	D	F	D	G	G	D	V	V	Q	R	L	R	K	.	N	S	A	L	P	I	I	V	L	T
Template Known Secondary structure								S														T	T	.	.	T							S	S											S			S								S														T	.	T
Template Predicted Secondary structure																								.	.																																														.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.
Query Sequence		T	D	C	N	K	R	W	L	Q	E	V	I	H	F	N	V	L	A	I	V	P	R	D	S	T	V	E	T	F	A	L	A	V	N	S	A	A	M	G	M	M	F	L	.	.	.	.	.	.	.	P	G	D	W	R	T	T	P	E	K	D	I	K	D	L	K	S	L	S	A	R	Q	R	E	I	L	T	M	L	A
Query Conservation																																													.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	D	T	V	E	E	K	V	R	L	L	G	L	G	A	D	D	Y	L	I	K	P	F	H	P	D	E	L	L	A	R	V	K	V	Q	L	R	Q	R	T	S	E	S	L	S	X	G	D	L	T	L	D	P	Q	K	R	L	V	T	Y	K	G	E	E	L	R	L	S	P	K	E	F	D	I	L	A	L	L	I
Template Known Secondary structure		S			S											T		S					S	S																			S						T	T					T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		155	.					.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure				.	.	.	.											.	.	.	.	.
Query SS confidence				.	.	.	.											.	.	.	.	.
Query Sequence		A	G	.	.	.	.	E	S	N	K	E	I	G	R	A	L	.	.	.	.	.	N	I	S	T	G	T	V	K	A	H	L	E	S	L	Y	R	R	L	E	V	K	N	R	T	Q	A	A
Query Conservation				.	.	.	.											.	.	.	.	.
Alig confidence				.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		R	Q	P	G	R	V	Y	S	R	Q	E	I	G	Q	E	I	W	Q	G	R	L	P	E	G	S	N	V	V	D	V	H	X	A	N	L	R	A	K	L	R	D	L	D	G	Y	G	L	L
Template Known Secondary structure			S	T	T														T	T		S		T	T		S																	S				S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions