Job Description P10371 Confidence 76.85% Date Thu Jan 5 11:32:09 GMT 2012 Rank 440 Aligned Residues 198 % Identity 15% Template d1bwva1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90					.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.																					.	.								.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.																					.	.								.	.	.	.
Query Sequence		L	P	R	L	Q	D	Y	A	A	Q	G	A	E	V	L	H	L	V	D	L	T	G	A	K	D	P	A	K	R	Q	I	P	.	.	.	.	.	.	.	.	L	I	K	T	L	V	A	G	V	N	V	P	V	Q	V	G	G	G	V	R	.	.	S	E	E	D	V	A	A	.	.	.	.	L	L	E	A	G	V	A
Query Conservation																																		.	.	.	.	.	.	.	.																					.	.								.	.	.	.
Alig confidence															.	.	.																	.	.	.	.	.	.	.	.																					.	.								.	.	.	.
Template Conservation															.	.	.
Template Sequence		G	R	V	V	Y	E	A	L	K	G	G	L	D	.	.	.	F	V	D	D	E	N	I	N	S	Q	P	F	M	R	W	R	E	R	Y	L	F	T	M	E	A	V	N	K	A	S	A	A	T	G	E	V	K	G	H	Y	L	N	V	T	A	A	T	M	E	E	M	Y	A	R	A	N	F	A	K	E	L	G	S	V
Template Known Secondary structure												T		S	.	.	.	B				T	T		S	S	B	T	T	B																					T	S			B								S	S														T	T		S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	V	V	G	S	T	A	V	K	S	Q	D	M	V	K	G	W	F	E	R	F	G	A	D	A	L	V	L	A	L	D	V	R	I	D	E	Q	G	N	K	Q	V	A	V	S	G	W	Q	E	N	S	G	V	S	L	E	Q	L	V	E	T	Y	L	P	V	G	L	K	H	V	L	C	T	D	I	S	R	D	G
Query Conservation
Alig confidence							.				.												.	.																			.	.	.	.	.																																.	.
Template Conservation							.				.												.	.																			.	.	.	.	.																																.	.
Template Sequence		I	I	M	I	D	.	L	V	I	.	G	Y	T	A	I	Q	T	M	A	K	W	.	.	A	R	D	N	D	M	I	L	H	L	H	R	A	G	N	S	T	Y	.	.	.	.	.	S	R	Q	K	N	H	G	M	N	F	R	V	I	C	K	W	M	R	M	A	G	V	D	H	I	H	A	G	T	V	V	.	.	G
Template Known Secondary structure							.	G	G	G	.												.	.				T	T								T	T	T				.	.	.	.	.		S		T	T	S	S														T		S							S	S	.	.	S
Template Predicted Secondary structure							.				.												.	.																			.	.	.	.	.																																.	.
Template SS confidence
		264	.	.	.	.		.	270	.		.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.																							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.								.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.								.
Query Sequence		T	L	A	G	S	N	V	S	L	Y	E	E	V	C	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	Q	V	A	F	Q	S	S	G	G	I	G	D	I	D	D	V	A	A	L	R	G	T	.	G	V	R	G	V	I	V	.	G	R	A	L	L	E	G	K	F
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.								.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.						.												.								.
Template Conservation																																														.						.
Template Sequence		K	L	E	G	D	P	I	I	T	R	G	F	Y	K	T	L	L	L	P	K	L	E	R	N	L	Q	E	G	L	F	F	D	M	E	W	A	S	L	R	K	V	M	P	V	.	A	S	G	G	I	.	H	A	G	Q	M	H	Q	L	I	H	Y	L	G	E	D	V	V	L	Q	F	G	G	G	T	I	G	H	P	D
Template Known Secondary structure		S	S																	S					B	T	T	T	T	B		S					T	T								.			S	S		.		T	T	S										S	S						S					T		T	T
Template Predicted Secondary structure																																														.						.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		234	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	K	E	A	I	A	C	W	Q	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	Q	A	G	A	T	A	N	R	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions