Job Description P10371 Confidence 99.23% Date Thu Jan 5 11:32:09 GMT 2012 Rank 61 Aligned Residues 143 % Identity 20% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.															.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	Q	V	G	G	G	V	R	S	E	E	D	.	.	.	.	V	A	A	L	L	E	A	G	V	A	R	V	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	T	A	V	K	S	Q	D	M	V	K	G	W	F	E	R	F	G	A	D	A	L	V	L	A	L	D	V	R	I	D	E	Q	G
Query Conservation															.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	.	.	.	.	.	.	.	.	.	.	.	X	G	E	A	V	R	V
Template Known Secondary structure		S								S															T	T		S										S							T		G	G	G	G	G	G												.	.	.	.	.	.	.	.	.	.	.			T	T		S	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120												.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.									.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																.	.																																	.	.	.	.	.	.	.	.
Query SS confidence																.	.																																	.	.	.	.	.	.	.	.
Query Sequence		N	K	Q	V	A	V	S	G	W	Q	E	N	S	G	.	.	V	S	L	E	Q	L	V	E	T	Y	L	P	V	G	L	K	H	V	L	C	T	D	I	S	R	D	G	T	L	A	G	S	.	.	.	.	.	.	.	.	N	V	S	L	Y	E	E	V	C	A	R	Y	P	Q	V	A	F	Q	S	S	G	G	I	G
Query Conservation																.	.																																	.	.	.	.	.	.	.	.
Alig confidence																.	.																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R
Template Known Secondary structure									S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	D	V	A	A	L	R	G	T	G	V	R	G	V	I	V	G	R	A	L	L
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		S	L	E	E	A	L	F	H	L	K	.	R	V	D	G	V	X	L	G	R	A	V	Y
Template Known Secondary structure		S									T	.	T	S	S					S
Template Predicted Secondary structure												.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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