Job Description P10371 Confidence 70.00% Date Thu Jan 5 11:32:09 GMT 2012 Rank 478 Aligned Residues 147 % Identity 14% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		L	P	R	L	Q	D	Y	A	A	Q	G	A	E	V	L	H	L	V	D	L	T	G	A	K	D	P	A	K	R	Q	I	P	L	I	K	T	L	V	A	G	V	N	V	P	V	Q	V	G	G	G	V	R	S	E	E	D	V	A	A	.	.	.	.	.	L	L	E	A	G	V	A	R	V	V	V	G	S	T	A	V
Query Conservation																																																													.	.	.	.	.
Alig confidence																									.	.	.																																		.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	.	.	.	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R
Template Known Secondary structure										T	S	S	S					B						S	.	.	.	S	S		S											T	T							S	S				T	T													T	T		S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		107	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		K	S	Q	D	M	.	.	.	.	.	V	K	G	W	F	E	R	F	G	A	D	A	L	V	L	A	L	D	V	R	I	D	E	Q	G	N	K	Q	V	A	V	S	G	W	Q	E	N	S	G	V	S	L	E	Q	L	V	E	T	Y	L	P	V	G	L	K	H	V	L	C	T	D	I	S	R	D	G	T	L	A	G
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	A
Template Known Secondary structure			S	S																		S								T	T	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G									T	T		S	S								S	S	S		S			T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.																	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	V	S	L	Y	E	E	V	C	A	R	Y	P	Q	V	A	F	Q	S	S	G
Query Conservation
Alig confidence			.							.	.	.	.	.
Template Conservation			.							.	.	.	.	.
Template Sequence		A	.	L	S	I	R	H	I	.	.	.	.	.	T	G	K	P	I	K	F	L	G
Template Known Secondary structure			.						T	.	.	.	.	.	T	T			B
Template Predicted Secondary structure			.							.	.	.	.	.
Template SS confidence
		259		260	.	.	.	.	.						.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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