Job Description P10371 Confidence 70.97% Date Thu Jan 5 11:32:09 GMT 2012 Rank 474 Aligned Residues 146 % Identity 20% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.																.
Query SS confidence																																																													.	.	.	.	.																.
Query Sequence		L	P	R	L	Q	D	Y	A	A	Q	G	A	E	V	L	H	L	V	D	L	T	G	A	K	D	P	A	K	R	Q	I	P	L	I	K	T	L	V	A	G	V	N	V	P	V	Q	V	G	G	G	V	R	S	E	E	D	V	A	A	.	.	.	.	.	L	L	E	A	G	V	A	R	V	V	V	G	S	T	A	.
Query Conservation																																																													.	.	.	.	.																.
Alig confidence																	.								.	.	.																																		.	.	.	.	.																.
Template Conservation																	.								.	.	.
Template Sequence		A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	.	L	V	A	A	D	T	Q	.	.	.	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R
Template Known Secondary structure											T	T					.						S	S	.	.	.																T								T	T																		T		S
Template Predicted Secondary structure																	.								.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
			106	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure		.							.	.	.
Query SS confidence		.							.	.	.
Query Sequence		.	V	K	S	Q	D	M	.	.	.	V	K	G	W	F	E	R	F	G	A	D	A	L	V	L	A	L	D	V	R	I	D	E	Q	G	N	K	Q	V	A	V	S	G	W	Q	E	N	S	G	V	S	L	E	Q	L	V	E	T	Y	L	P	V	G	L	K	H	V	L	C	T	D	I	S	R	D	G	T	L	A	G
Query Conservation		.							.	.	.
Alig confidence		.							.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K	L	D	G	D	A	R	G	G	A
Template Known Secondary structure		S	S																			S								S	S	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S										S	S	S		S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	V	S	L	Y	E	E	V	C	A	R	Y	P	Q	V	A	F	Q	S	S	G
Query Conservation
Alig confidence			.							.	.	.	.	.
Template Conservation			.							.	.	.	.	.
Template Sequence		A	.	L	S	A	R	H	V	.	.	.	.	.	T	G	K	P	I	Y	F	A	G
Template Known Secondary structure			.							.	.	.	.	.	S							B
Template Predicted Secondary structure			.							.	.	.	.	.
Template SS confidence
		256		.	.	.	260	.	.						.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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