Job Description P10371 Confidence 99.47% Date Thu Jan 5 11:32:09 GMT 2012 Rank 44 Aligned Residues 201 % Identity 14% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.																						.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	G	T	V	V	R	L	H	Q	G	D	Y	G	K	Q	R	D	Y	G	N	D	P	L	P	R	L	Q	D	Y	A	A	Q	G	A	E	V	L	H	L	V	D	L	T	G	A	K	D	P	A	K	R	Q	I	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	T
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.																		.	.	.
Template Sequence		E	K	A	L	V	S	Y	L	M	V	G	Y	P	D	Y	E	T	S	.	.	.	.	.	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	.	.	.	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D	V	L	E	L	S	E	T
Template Known Secondary structure		B									T	T	S	S						.	.	.	.	.										T	T		S					.	.	.					S			T	T	S														T	T
Template Predicted Secondary structure																				.	.	.	.	.																		.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		68	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure						.																	.	.	.	.	.	.
Query SS confidence						.																	.	.	.	.	.	.
Query Sequence		L	V	A	G	.	V	N	V	P	V	Q	V	G	G	G	V	R	S	E	E	D	.	.	.	.	.	.	V	A	A	L	L	E	A	G	V	A	R	V	V	V	G	S	T	A	V	K	S	Q	D	M	V	K	G	W	F	E	R	F	G	A	D	A	L	V	L	A	L	D	V	R	I	D	E	Q	G	N	K	Q	V
Query Conservation						.																	.	.	.	.	.	.
Alig confidence						.																	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	P	D	L	P	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	S																										T	T							T	T																T	T									T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	G	W	Q	E	N	S	G	V	S	L	E	Q	L	V	E	T	Y	L	P	V	G	L	K	H	V	L	C	T	D	I	S	R	D	G	T	L	A	G	S	N	V	S	L	Y	E	E	V	C	A	R	Y	P	Q	V	A	F	Q	S	S	G	G	I	G	D	I	D	D	V	A	A	L	R	G	T	G	V	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.											.																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.											.																							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	T	R	K	R	I	K	L	I	C	E	A	A	D	E	M	T	Y	F	V	S	V	T	G	Y	E	R	I	.	.	.	.	K	K	K	V	E	E	Y	R	E	L	.	C	D	K	P	V	V	V	G	F	G	V	S	K	K	E	H	A	R	E	I	G	S	.	F	A	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.														S	S						S	S							.	.	.	.											.			S						S	S			S									T	.	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.											.																							.
Template SS confidence
													158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220
		221	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		G	V	I	V	G	R	A	L	L	E	.	.	G	K	F	T	V	K	E	A	I	A	C	W	Q	N
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	K	I	E	D	L	G	N	L	V	K	E
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions