Phyre 2 alignment of P31456 with d1qo8a2

Job Description P31456
Confidence 99.61% Date Thu Jan 5 11:47:48 GMT 2012

Rank 52 Aligned Residues 249

% Identity 17% Template d1qo8a2

SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Resolution 2.15

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																								.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	H	F	D	V	A	I	I	G	L	G	P	A	G	S	A	L	A	R	K	L	A	G	.	K	M	Q	V	I	A	L	D	K	K	H	Q	C	G	T	E	G	F	S	K	P	C	G	G	L	L	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	T	T	Q	V	L	V	V	G	A	G	S	A	G	F	N	A	S	L	A	A	K	K	A	G	A	N	V	I	L	V	D	K	A	P	F	S	G	G	N	S	M	I	S	A	G	G	M	N	A	V	G	T	K	Q	Q	T	A	H	G	V	E	D	K	V	E	W	F	I	E	D	A	M	K	G	G	R	Q	Q	N
Template Known Secondary structure											S														T								S	S	S	S	S		T	T	G	G	G			S					S	S							T	T																T	T	T		S
Template Predicted Secondary structure
Template SS confidence
	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

														53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	Q	R	S	F	I	R	D	G	L	T	L	P	V	D	V	I	A	N	P	Q	I	F	S	V	K	T	V	D	V	A	A	S	L	T	R	N	Y	Q	R	S	Y	I	N	I	N	R	H	A	F	D	L	W	M	K	S	L	I	P	A	S	V	E	V	Y	H
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.
Template Sequence	D	I	K	L	V	T	I	L	A	E	Q	S	A	D	G	V	Q	W	L	E	S	L	G	A	N	L	.	.	.	.	.	.	.	.	.	.	D	D	L	K	R	S	G	G	A	R	V	D	R	T	H	R	P	H	G	G	K	S	S	G	P	E	I	I	D	T	L	R	K	A	A	K	E	Q	G	I	D	T	R	L
Template Known Secondary structure																						T	T				.	.	.	.	.	.	.	.	.	.							T	T		S	S							S	S	S	S																	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.											.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence	D	S	L	C	R	K	I	W	R	E	D	.	.	.	D	K	W	H	V	I	F	R	A	D	G	W	E	Q	H	I	T	A	R	Y	L	V	G	A	D	G	A	N	S	M	V	R	R	H	L	Y	P	D	H	Q	I	R	K	Y	V	A	I	Q	Q	W	F	A	E	K	H	P	V	P	F	Y	S	C	I	F	D	N
Query Conservation												.	.	.
Alig confidence												.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	N	S	R	V	V	K	L	V	V	N	D	D	H	S	V	V	G	A	V	V	H	G	K	H	T	G	Y	Y	M	I	G	A	K	S	V	V	L	A	T	G	G	Y	G	M	N	K	E	M	I	A	Y	Y	R	P	T	M	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure	S										T	T	S	B									T	T	T																		T	T										G	G	G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	I	T	N	C	Y	S	W	S	I	S	K	D	G	Y	F	I	F	G	G	A	Y	P	M	K	D	G	Q	T	R	F	T	T	L	K	E	K	M	S	A	F	Q	F	Q	F	G	K	T	V	K	S	E	K	C	T	V	L	F	P	S	R	W	Q	D	F	V	C	G	K	D	N	A	F	L	I	G	E	A	A	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	T	S	S	N	N	I	T	A	T	G	D	G	V	L	M	A	K	E	I	G	A	S	M	T	D	I	D	W	V	Q	A	A	I	N	T	T	A	S	V	L	D	L	Q	S	K	P	I	D	G	L	F	A	A	G	E	V	T	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		T	T		S										T	T	B			S	S	T	T						B		T	T					B	T	T	S										S	T	T	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

	277	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence	F	I	S	.	.	.	A	S	S	L	E	G	I	S	Y	A	L	D	S	T	D	I	L	R	S	V	L	L	K	Q
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence	G	V	H	G	Y	N	R	L	G	G	N	A	I	A	D	T	V	V	F	G	R	I	A	G	D	N	A	A	K	H
Template Known Secondary structure	S	S	S	T	T				T	T
Template Predicted Secondary structure
Template SS confidence
	533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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