Job Description P31456 Confidence 99.69% Date Thu Jan 5 11:47:48 GMT 2012 Rank 44 Aligned Residues 315 % Identity 14% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	H	F	D	V	A	I	I	G	L	G	P	A	G	S	A	L	A	R	K	L	A	.	G	K	M	Q	V	I	A	L	D	K	K	H	Q	C	G	T	E	G	F	S	K	P	C	G	G	L	L	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	C	D	D	I	A	I	I	G	G	G	I	V	S	A	L	T	A	L	A	L	Q	R	R	G	A	V	V	T	L	Y	C	A	D	A	Q	P	A	Q	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	N	G	K	N	D	A	L	E	T	F	F	T	S	A	F	T	F	A	R	R	Q	Y	D	Q	L	L	E
Template Known Secondary structure				S	S							S												T	T	T								S	S	S	S	T	T		S	G	G	G		S										S	S		S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
																								53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	Q	R	S	F	I	R	D	G	L	T	L	P	V	D	V	I	A	N	P	Q	I	F	S	V	K	T	V	D	V	A	A	S	L	T	R	N	Y	Q	R	S	Y	I	N	I	N	R	H	A	F	D	L	W	M	K	S	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	I	A	F	D	H	Q	W	C	G	V	S	Q	L	A	F	D	D	K	S	R	G	K	I	E	K	X	L	H	T	Q	W	P	V	E	F	A	E	A	X	S	R	E	Q	L	S	E	L	A	G	L	D	C	A	H	D	G	I	H	Y	P	A	G	G	W	L	C	P	S	D	L	T	H	A	L	X	X	L	A
Template Known Secondary structure		T	T																S											T	T	S				T	T	T														S	S			S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	A	S	V	E	V	Y	H	D	S	L	C	R	K	I	W	R	E	D	D	K	W	H	V	I	F	R	A	D	G	W	E	Q	H	I	T	A	R	Y	L	V	G	A	D	G	A	N	S	M	V	R	R	H	L	Y	P	D	H	Q	I	R	K	Y	V	A	I	Q	Q	W	F	A	E	K	H	P	V	P	F	Y
Query Conservation
Alig confidence																													.	.	.																				.	.	.
Template Conservation																													.	.	.																				.	.	.
Template Sequence		Q	Q	N	G	X	T	C	H	Y	Q	H	E	L	Q	R	L	K	R	I	D	S	Q	W	Q	L	T	F	.	.	.	G	S	Q	A	A	K	H	H	A	T	V	I	L	A	T	G	H	R	L	.	.	.	P	E	W	E	Q	T	H	H	L	P	L	S	A	V	R	G	Q	V	S	H	I	P	T	T	P	V	L	S
Template Known Secondary structure				T	T						S										S	S	S						.	.	.									S							G	G	G	T	.	.	.	T		S	T	T	T	T	T	S																T	T	G	G
Template Predicted Secondary structure																													.	.	.																				.	.	.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.				450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.				.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.																																													.
Query SS confidence																											.	.																																													.
Query Sequence		S	C	I	F	D	N	S	I	T	N	C	Y	S	W	S	I	S	K	D	G	Y	F	I	F	G	.	.	G	A	Y	P	M	K	D	G	Q	T	R	F	T	T	L	K	E	K	M	S	A	F	Q	F	Q	F	G	K	T	V	K	S	E	K	C	T	V	L	F	P	S	R	W	Q	.	D	F	V	C	G	K	D	N
Query Conservation																											.	.																																													.
Alig confidence																											.	.																																													.
Template Conservation
Template Sequence		Q	L	Q	Q	V	L	C	Y	D	G	Y	L	T	P	V	N	P	A	N	Q	H	H	C	I	G	A	S	Y	Q	R	G	D	I	A	T	D	F	R	L	T	E	Q	Q	E	N	R	E	R	L	L	R	C	L	P	Q	V	S	W	P	Q	Q	V	D	V	S	D	N	Q	A	R	C	G	V	R	C	A	I	R	D	H
Template Known Secondary structure		G			S				S	S	S						B	T	T	T	T											T	B																						T	T		S	G	G	G	G				T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		268	.	270	.	.	.	.																													.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	L	I	G	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	F	I	S	A	S	S	L	E	G	I	S	Y	A	L	D	S	T	D	I	L	R	S	V	L	L	K	Q	P	E	K	L	N	T	A	Y	W	R	A	T	R	K	L	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	X	V	G	A	V	P	D	Y	A	A	T	L	A	Q	Y	Q	D	L	S	R	R	I	N	D	I	A	V	A	P	V	W	P	E	L	F	X	V	G	G	L	G	S	R	G	L	C	S	A	P	L	V	A	E	I	L	A	A	Q	X	F	G	E	P	L	P	L	D	A	K	T	L	A	A	L	N	P	N	R
Template Known Secondary structure																		S	T	T																								T	T																		T	T				S	S							T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
		320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	W	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		666	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions