Job Description P31456 Confidence 99.49% Date Thu Jan 5 11:47:48 GMT 2012 Rank 76 Aligned Residues 292 % Identity 12% Template c3i6dA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af Resolution 2.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50												.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	A	I	I	G	L	G	P	A	G	S	A	L	A	R	K	L	A	G	.	.	.	.	.	.	.	K	M	Q	V	I	A	L	D	K	K	H	Q	C	G	T	E	G	F	S	K	P	C	G	G	L	L	.	.	.	.	.	.	.	.	.	.	.	A	P	D	A	Q	R	S	F	I	R	D	G	L	T	L	P
Query Conservation																						.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	V	I	I	G	G	G	I	T	G	L	A	A	A	F	Y	M	E	K	E	I	K	E	K	N	L	P	L	E	L	T	L	V	E	A	S	P	R	V	G	G	K	I	Q	T	V	K	K	D	G	Y	I	I	E	R	G	P	D	S	F	L	E	R	K	K	S	A	P	Q	L	V	K	D	L	G	L	E	H	L
Template Known Secondary structure									S															T	T	T	T		S								S	S	S	S	S		T	T							T	T					S	S						T	T		T									T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80																																																															.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	V	I	A	N	P	Q	I	F	S	V	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	V	A
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	N	N	A	T	G	Q	S	Y	V	L	V	N	R	T	L	H	P	M	P	K	S	G	K	A	R	A	A	M	D	F	I	L	P	A	S	K	T	K	D	D	Q	S	L	G	E	F	F	R	R	R	V	G	D	E	V	V	E	N	L	I	E	P	L	L	S	G	I	Y	A	G	D	I	D	K	L	S	L	M
Template Known Secondary structure															S	S										S									S				S	S	S	S			B									S								T								T	T		S		T	T	T	B	B
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	T	R	N	Y	Q	R	S	Y	I	N	I	N	R	H	A	F	D	L	W	M	K	S	L	I	P	A	S	V	E	V	Y	H	D	S	L	C	R	K	I	W	R	E	D	D	K	W	H	V	I	F	R	A	D	G	W	E	Q	H	I	T	A	R	Y	L	V	G	A	D	G	A	N	S	M	V	R	R	H
Query Conservation
Alig confidence																														.																									.	.	.
Template Conservation																														.																									.	.	.
Template Sequence		S	T	F	P	Q	F	Y	Q	F	Q	T	L	S	T	G	L	Q	T	L	V	E	E	I	E	K	Q	L	K	.	L	T	K	V	Y	K	G	T	K	V	T	K	L	S	H	S	G	S	C	Y	S	L	E	L	.	.	.	D	N	G	V	T	L	D	A	D	S	V	I	V	T	A	P	H	K	A	A	A	G	M	L
Template Known Secondary structure					G	G	G							T	T		T										T			.	S						S										S	S	S						.	.	.	S	S	S						S						S									T
Template Predicted Secondary structure																														.																									.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		165	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.											.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	P	D	H	.	.	.	.	.	Q	I	R	K	Y	V	A	I	Q	Q	W	F	A	E	K	H	P	.	.	.	.	.	V	P	F	Y	S	C	I	F	D	N	S	I	T	N	C	Y	S	W	S	I	.	.	.	.	.	.	.	.	.	.	S	K	D	G	Y	F	I	F	G	G	A	Y	P	M	K	D	G	Q
Query Conservation							.	.	.	.	.																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.																		.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	L	P	A	I	S	H	L	K	N	M	H	S	T	S	V	A	N	V	A	L	G	F	P	E	G	S	V	Q	M	E	H	E	G	T	G	F	V	I	S	R	N	S	D	F	A	I	T	A	C	T	W	T	N	K	K	W	P	H	A	A	P	E	G	K	T	L	L	R	A	Y	V	G	K	A	G	D	E	S
Template Known Secondary structure		T	T	S	T	T						T														S	S	T	T				S	S		S	S						S	T	T			S												G	G	G	S		T	T											S	S			G
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	F	T	T	L	K	E	K	M	S	A	F	Q	F	Q	F	G	K	T	V	K	S	E	K	C	T	V	L	F	P	S	R	W	Q	D	F	V	C	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	A	F	L	I	G	E	A	A	G	F	I	S	A	S	S	L	E
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.
Template Sequence		I	V	D	L	S	D	N	D	I	I	N	I	V	L	E	D	L	K	K	V	M	N	I	N	G	E	P	E	M	T	C	V	T	R	W	H	E	S	M	P	Q	Y	H	V	G	H	K	Q	R	I	K	E	L	R	E	A	L	A	S	A	Y	P	G	V	Y	M	T	G	A	S	.	.	.	.	.	.	F	E	G	V
Template Known Secondary structure		G	G	T	S														G	G	G	S				S			S															B	T	T																S	T	T					S	T	T	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																																								.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.							.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	S	Y	A	L	D	S	T	D	I	L	R	S	V	L	L	K	Q	P	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	P	D	C	I	D	Q	G	K	A	A	V	S	D	A	L	T	Y	L	F	S
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions