Job Description P31456 Confidence 99.69% Date Thu Jan 5 11:47:48 GMT 2012 Rank 43 Aligned Residues 293 % Identity 14% Template c2gahB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit; PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																										.		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	H	F	D	V	A	I	I	G	L	G	P	A	G	S	A	L	A	R	K	L	A	G	.	K	.	.	M	Q	V	I	A	L	D	K	K	H	Q	C	G	T	E	G	F	S	K	P	C	G	G	L	L	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.		.	.														.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.
Template Sequence		K	K	S	Y	D	A	I	I	V	G	G	G	G	H	G	L	A	T	A	Y	F	L	A	K	N	H	G	I	T	N	V	A	V	L	E	K	G	W	L	A	G	.	.	G	N	X	A	R	N	T	T	I	I	R	S	N	Y	L	W	D	E	S	A	G	I	Y	E	K	S	L	K	L	W	E	Q	L	P	E	D	L
Template Known Secondary structure			S										S																								S	S	S	T	T		.	.	S	G	G	G	T	S				B					S	S																					T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
																											53	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	Q	R	S	F	I	R	D	G	L	T	L	.	.	.	.	P	V	D	V	I	A	N	P	Q	I	F	S	V	K	T	V	D	V	A	A	S	L	T	R	N	Y	Q	R	S	Y	I	N	I	N	R	H	A	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		E	Y	D	F	L	F	S	Q	R	G	V	L	N	L	A	H	T	L	G	D	V	R	E	S	V	R	R	V	E	A	N	K	L	N	G	V	D	A	E	W	L	D	P	S	Q	V	K	E	A	C	P	I	I	N	T	S	D	D	I	R	Y	P	V	X	G	A	T	W	Q	P	R	A	G	I	A	K	H	D	H	V
Template Known Secondary structure		T						B										S																T	T	T																T	T	S			S	S		S	S	S									T	T		B	B
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure												.																																															.
Query SS confidence												.																																															.
Query Sequence		D	L	W	M	K	S	L	I	P	A	.	S	V	E	V	Y	H	D	S	L	C	R	K	I	W	R	E	D	D	K	W	H	V	I	F	R	A	D	G	W	E	Q	H	I	T	A	R	Y	L	V	G	A	D	G	A	N	S	.	M	V	R	R	H	L	Y	P	D	H	Q	I	R	K	Y	V	A	I	Q	Q	W	F
Query Conservation												.																																															.
Alig confidence												.																										.	.	.																			.
Template Conservation																																						.	.	.
Template Sequence		A	W	A	F	A	R	K	A	N	E	X	G	V	D	I	I	Q	N	C	E	V	T	G	F	I	K	D	G	E	K	V	T	G	V	K	T	.	.	.	T	R	G	T	I	H	A	G	K	V	A	L	A	G	A	G	H	S	S	V	L	A	E	X	A	G	F	E	L	P	I	Q	S	H	P	L	Q	A	L	V	S
Template Known Secondary structure												T	T						S									S	S	S	B							.	.	.	T	T													G	G	G									T
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.
Query Sequence		A	E	K	H	P	V	P	F	Y	S	C	I	F	D	N	S	I	T	N	C	Y	S	W	S	I	S	K	D	G	Y	F	I	F	G	G	A	Y	P	M	K	D	.	.	.	.	.	.	G	Q	T	R	F	T	T	L	K	E	K	M	S	A	F	Q	F	Q	F	G	K	T	V	K	S	E	K	C	T	V	L	F	P
Query Conservation																																											.	.	.	.	.	.
Alig confidence																		.	.	.																							.	.	.	.	.	.
Template Conservation																		.	.	.
Template Sequence		E	L	F	E	P	V	H	P	T	V	V	X	S	N	H	I	.	.	.	H	V	Y	V	S	Q	A	H	K	G	E	L	V	X	G	A	G	I	D	S	Y	N	G	Y	G	Q	R	G	A	F	H	V	I	Q	E	Q	X	A	A	A	V	E	L	F	P	I	F	A	R	A	H	V	L	R	T	W	G	G	I	V	D
Template Known Secondary structure					S	S				S					T	T	T	.	.	.	T							T	T	S										S	S				S	S				T															G	G	G	T	T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		S	R	W	Q	D	F	V	C	G	K	D	N	A	F	L	I	G	E	A	.	.	.	.	A	G	F	I	S	A	S	S	L	E	G	I	S	Y	A	L	D	S	T	D	I	L	R	S	V	L	L	K	Q	P	E	K	L	N
Query Conservation																					.	.	.	.
Alig confidence					.	.	.	.	.	.	.										.	.	.	.
Template Conservation					.	.	.	.	.	.	.
Template Sequence		T	T	X	.	.	.	.	.	.	.	D	A	S	P	I	I	S	K	T	P	I	Q	N	L	Y	V	N	C	G	W	G	T	G	G	F	K	G	T	P	G	A	G	F	T	L	A	H	T	I	A	N	D	E	P	H	E	L
Template Known Secondary structure				T	.	.	.	.	.	.	.	T	S								S	S	B	T							B	T	T			S	T	T															T	S			T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.
Template SS confidence
		331	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions