Return to main results Retrieve Phyre Job Id

Job DescriptionP32669
Confidence42.29%DateThu Jan 5 11:49:58 GMT 2012
Rank167Aligned Residues183
% Identity17%Templatec3navB_
PDB info PDB header:lyaseChain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30... ......40......... 50........ .60.........70.........80....
Predicted Secondary structure 









......



..





.....




.
Query SS confidence 














. . . . . .















. .








. . . . .

























.
Query Sequence  IFPIAGVTTNPSIIA. . . . . . ASKESIWEVLPRLQKA. . IGDEGILFA. . . . . QTMSRDAQGMVEEAKRLRDAIPGIVV.
Query Conservation   
 
 








 ......
 
         
   ..    
 


.....

   
 
 

  
  
     

 
.
Alig confidence 














......















..








.....
















..






.
Template Conservation 





 






 
   

  
         
   
      




 
 
 
   
 
 
       ..

 




Template Sequence  MPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKA. . GVDSVLIA
Template Known Secondary structure 




TT


TT


TTS

TT
..T

T
Template Predicted Secondary structure 

























..







Template SS confidence 















































































   52.......60.........70.........80.........90.........100.........110.........120. ........
 
   85....90.........100...... ...110.........120.........130.........140.........150.........160..
Predicted Secondary structure 






..















Query SS confidence 





















. .























































Query Sequence  KIPVTSEGLAAIKILKKEGITT. . LGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRTVQELQTLLEMHAPESMV
Query Conservation 


 
  
  
   
   

 
..
 
 


  

  

 


 










 
 

   
             
 
Alig confidence 







.












..






















.





.........
















Template Conservation 


 

  .         

  
 

 


   

  
   
 



. 

  
.........

  
  

  
  

 
Template Sequence  DVPTNESQ. PFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTY. LLSRAP. . . . . . . . . VHALLERLQQFDAPPAL
Template Known Secondary structure  TS
GGG
.TT


TT

S

S
.




.........TT


Template Predicted Secondary structure 


.











.


.........




Template SS confidence 















































































   130....... ..140.........150.........160.........170..... ....180. ........190........
 
   163......170.........180.........190......... 200.........210....
Predicted Secondary structure 












....
Query SS confidence 




































. . . .














Query Sequence  LAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPA. . . . VESAIEKFEHDWNAA
Query Conservation 
 

 
    
     

 
  


  

  
   
 ....
   
  
  
    
Alig confidence 




































....














Template Conservation 




  

        











  
             
      

 
Template Sequence  LGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQAMKKA
Template Known Secondary structure 
SS

STT
SSSTTT
T
Template Predicted Secondary structure 













Template SS confidence 























































   210.........220.........230.........240.........250.........260.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions