Job Description P32669 Confidence 100.00% Date Thu Jan 5 11:49:58 GMT 2012 Rank 12 Aligned Residues 210 % Identity 31% Template c3clmA_ PDB info PDB header:lyase Chain: A: PDB Molecule:transaldolase; PDBTitle: crystal structure of transaldolase (yp_208650.1) from neisseria2 gonorrhoeae fa 1090 at 1.14 a resolution Resolution 1.14 Å

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		2	.	.	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																										.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																										.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	Y	L	D	T	A	N	V	A	.	.	.	.	.	E	V	E	R	L	A	R	I	F	P	I	A	G	V	T	T	N	P	S	I	I	A	A	S	K	.	.	.	E	S	I	W	E	V	L	P	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.																										.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.										.																.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		Q	I	W	L	D	N	L	S	R	S	L	V	Q	S	G	E	L	A	Q	X	L	K	Q	G	.	V	C	G	V	T	S	N	P	A	I	F	Q	K	A	F	A	G	D	A	L	Y	A	D	E	V	A	A	L	K	R	Q	N	L	S	P	K	Q	R	Y	E	T	X	A	V	A	D	V	R	A	A	C	D	V	C	L
Template Known Secondary structure						S									T	S							T	T	T	.																			T	T									T	T	S	S
Template Predicted Secondary structure																										.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
					47	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.															.	.	.																			.	.
Query SS confidence		.	.	.															.	.	.																			.	.
Query Sequence		.	.	.	Q	K	A	I	G	D	E	G	I	L	F	A	Q	T	.	.	.	M	S	R	D	A	Q	G	M	V	E	E	A	K	R	L	R	D	A	.	.	I	P	G	I	V	V	K	I	P	V	T	S	E	G	L	A	A	I	K	I	L	K	K	E	G	I	T	T	L	G	T	A	V	Y	S	A	A	Q	G	L
Query Conservation		.	.	.															.	.	.																			.	.
Alig confidence		.	.	.															.	.	.																			.	.
Template Conservation
Template Sequence		A	E	H	E	S	T	G	G	K	T	G	F	V	S	L	E	V	S	P	E	L	A	K	D	A	Q	G	T	V	E	E	A	R	R	L	H	A	A	I	A	R	K	N	A	X	I	K	V	P	A	T	D	A	G	I	D	A	L	E	T	L	V	S	D	G	I	S	V	N	L	T	L	L	F	S	R	A	Q	T	L
Template Known Secondary structure							T	T	S	S	S									G	G	G	T	T																			T	T								S													T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		119	120	.	.	.	.	.																		.	.	.	.	130	.	.	.	.	.	.	.											.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	A	L	A	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	V	A	P	Y	V	N	R	V	D	A	.	.	.	.	.	.	.	.	.	.	Q	G	G	D	G	I	R	T	V	Q	E	L	Q	T	L	L	E	M	H	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	Y	A	A	Y	A	R	G	I	A	K	R	L	A	A	G	Q	S	V	A	H	I	Q	V	V	A	S	F	F	I	S	R	V	D	S	A	L	D	A	T	L	P	D	R	L	K	G	K	T	A	I	A	L	A	K	A	A	Y	Q	D	W	E	Q	Y	F	T	A	P	E	F	A	A	L	E	A	Q	G	A	N
Template Known Secondary structure																	T	T				T	T																	G	G	G	S		G	G	G	T	T	T																			S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		159	160	.	.	.	.	.	.								.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.																																		.
Predicted Secondary structure										.	.	.	.	.	.	.																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	M	V	L	A	A	S	.	.	.	.	.	.	.	F	K	T	P	R	Q	A	L	D	C	L	L	A	G	C	E	S	I	.	T	L	P	L	D	V	A	Q	Q	M	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Query Conservation										.	.	.	.	.	.	.																			.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.											.	.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.
Template Sequence		R	V	Q	L	L	W	A	S	T	G	V	K	N	P	A	Y	P	D	T	L	Y	V	D	S	L	.	.	I	G	V	H	T	V	N	T	V	P	D	A	T	L	K	A	F	I	D	H	G	T	A	K	A	T	L	T	E	S	A	D	E	A	R	A	R	L	A	E	I	A	A	L	G	I	D	V	E	T	L	A	A
Template Known Secondary structure									S		S				T	T	S		T	T							.	.			T	T																							T	T	T	T														T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	V	E	S	A	I	E	K	F	E	H	D	W	N	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	Q	E	D	G	L	K	Q	F	E	E	A	F	E	K	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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