Job Description P32669 Confidence 30.51% Date Thu Jan 5 11:49:58 GMT 2012 Rank 196 Aligned Residues 129 % Identity 17% Template c2w27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ykui protein; PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium Resolution 2.80 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure															.																					.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																					.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	S	I	I	A	A	S	K	E	S	I	W	.	E	V	L	P	R	L	Q	K	A	I	G	D	E	G	I	L	F	A	Q	T	.	.	.	.	M	S	R	D	A	Q	G	M	V	E	E	A	K	R	L	R	D	A	I	P	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.																					.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																					.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	N	L	L	M	L	D	H	G	E	S	F	L	E	L	L	K	E	Y	E	A	K	G	I	E	L	H	R	F	V	L	E	I	T	E	H	N	F	E	G	D	I	E	Q	L	Y	H	M	L	A	Y	Y	R	T	Y	G	I	K	I	A	V	D	N	I	G	K	E	S	S	N	L	D	R	I	A	L	L	S	P
Template Known Secondary structure							G	G	G	T	T														T			G	G	G							G	G	G			S														T	T	T									T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
				84	.	.	.	.	.							90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.							.	.	.	.	.	.														.																												.
Query SS confidence		.	.							.	.	.	.	.	.														.																												.
Query Sequence		.	.	V	K	I	P	V	T	.	.	.	.	.	.	S	E	G	L	A	A	I	K	I	L	K	K	E	.	G	I	T	T	L	G	T	A	V	Y	S	A	A	Q	G	L	L	A	A	L	A	G	A	K	Y	V	A	.	P	Y	V	N	R	V	D	A	Q	G	G	D	G	I	R	T	V	Q	E	L	Q	T	L	L
Query Conservation		.	.							.	.	.	.	.	.														.																												.
Alig confidence		.	.							.	.	.	.	.	.														.																												.
Template Conservation
Template Sequence		D	L	L	K	I	D	L	Q	A	L	S	P	S	Y	E	H	V	L	Y	S	I	S	L	L	A	R	K	I	G	A	A	L	L	Y	E	D	I	E	A	N	F	Q	L	Q	Y	A	W	R	N	G	G	R	Y	F	Q	G	Y	Y	L	V	S	P	S	E	T	F	L	E	R	D	V	L	K	Q	R	L	K	T	E	F
Template Known Secondary structure		S							T	T																				T										S										T	T						S	T	T	T				B	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		154	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		255	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions