Job Description P32669 Confidence 85.96% Date Thu Jan 5 11:49:58 GMT 2012 Rank 103 Aligned Residues 139 % Identity 17% Template c2fptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors Resolution 2.40 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.
Predicted Secondary structure																							.																																																			.	.	.
Query SS confidence																							.																																																			.	.	.
Query Sequence		M	S	R	D	A	Q	G	M	V	E	E	A	K	R	L	R	D	A	I	P	G	.	I	V	V	K	I	P	V	T	S	E	G	L	A	A	I	K	I	L	K	K	E	G	I	T	T	L	G	T	A	V	Y	S	A	A	Q	G	L	L	A	A	L	A	G	A	K	Y	V	A	P	Y	.	.	.	V	N	R	V	D
Query Conservation																							.																																																			.	.	.
Alig confidence																							.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	R	L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V	H	R	P	A	V	L	V	K	I	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	T	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A
Template Known Secondary structure															T	S		G	G	G										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T										B	S				T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		137	.	.	140	.	.														.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		A	Q	G	G	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	T	V	Q	E	L	Q	T	L	L	E	M	H	A	P	E	S	M	V	L	A	A	S	.	F	K	T	P	R	Q	A	L	D	C	L	L	A	G	C	E	S	I	T	L	P	L	D	V	A	Q	Q	M	L	N	T	P	A	V	E	S
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																									.																												.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		G	L	Q	G	A	L	R	S	E	T	G	G	L	S	G	K	P	L	R	D	L	S	T	Q	T	I	R	E	M	Y	A	L	T	Q	G	R	V	P	I	I	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	A	S	L	V	Q	L	Y	T	A	L	T	F	W	.	.	.	G	P	P	V	V	G
Template Known Secondary structure		T				T	T	T	T	S	S	S																						T	T	T		S						S	S			S											T		S					S							.	.	.		T
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	E	K	F	E	H	D	W	N	A	A	F	G	T	T	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	K	R	E	L	E	A	L	L	K	E	Q	G	F	G	G	V
Template Known Secondary structure														T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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