 |
Job Description | P77485 | Confidence | 37.86% | Date | Thu Jan 5 12:29:46 GMT 2012 |
Rank | 82 | Aligned Residues | 66 |
% Identity | 14% | Template | c1ybyB_ |
PDB info |
PDB header:translation | Chain: B: PDB Molecule:translation elongation factor p; |
PDBTitle: conserved hypothetical protein cth-95 from clostridium2 thermocellum
|
Resolution | 1.95 Å |
|
 |
  |   |
354 | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | |
|
. | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | D | R | G | V | E | L | R | F | V | G | D | K | C | Q | V | A | G | D | P | L | M | L | R | R | A | L | S | N | . |
. |
L | L | S | N | A | L | R | Y | T | P | T | G | E | T | I | V | V | R | C | Q | T | V | . |
. |
. |
. |
. |
. |
. |
D | H | L | V | Q | V | I | V | E | N | P | G | T | P | I |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
| . | . |
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |
|   |
|   |
|   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|   |
|
|   |   |   |
|
|
|
|   |
|
|
|
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |
|   |
|   |
|
|   |
|
|   |
Template Sequence |   |
E | R | K | D | X | Q | Y | L | Y | N | D | G | D | L | Y | Y | F | X | D | T | E | T | F | E | Q | L | P | L | G | K | D | K | I | G | D | A | L | K | F | V | K | E | N | E | I | V | K | V | L | S | H | K | G | N | V | F | G | I | E | P | P | N | F | V | E | L | E | V | T | D | T | E | P | G | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |
| T | T | T |
|
|  |  |  |  |  |  |  |  |  | T | T | T | T | T | T |
|
| T | T |
|  |  |  |  |  |  | S | S | S |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
66 | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|