Job Description P0ADP0 Confidence 95.90% Date Thu Jan 5 11:21:27 GMT 2012 Rank 126 Aligned Residues 125 % Identity 16% Template c2ia5C_ PDB info PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium. Resolution 2.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	T	F	D	L	D	D	T	L	Y	D	N	R	P	V	I	L	R	T	E	R	E	A	L	T	F	V	Q	N	Y	H	P	A	L	R	S	F	Q	N	E	D	L	Q	R	L	R	Q	A	V	R	E	A	E	P	E	I	Y	H	D	V	T	R	W	R	F	R	S	I	E	Q	A	M	L	D	A	G	L	S
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	V	I	F	D	V	D	G	T	L	A	K	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	B	T	T	T	B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.															.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	E	A	S	A	G	A	H	A	A	M	I	N	F	A	K	W	R	S	R	I	D	V	P	Q	Q	T	H	D	T	L	K	Q	L	A	K	K	W	P	L	V	A	I	T	N	G	N	A	Q	P	E	L	F	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	Y	F	E	F	V	L	R	A
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	P	Y	D	L	E	K	C	D	T	D	V	I	N	P	M	V	V	E	L	S	K	M	Y	A	L	M	G	Y	Q	I	V	V	V	S	G	R	E	S	G	T	K	E	D	P	T	K	Y	Y	R	M	T	R	K	W	V	E	D	I	A	G	V	P	L	V	M	Q	C	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.					T	T				S	T	T	B													T	T	T									S					S	S		T	T											T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	H	G	R	S	K	P	F	S	D	M	Y	F	L	A	A	E	K	L	N	V	P	I	G	E	I	L	H	V	G	D	D	L	T	T	D	V	G	G	A	I	R	S	G	M	Q	A	C	W	I	R	P	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	Q	G	D	T	R	K	D	D	V	V	K	E	E	I	F	W	K	H	I	A	P	H	F	D	V	K	L	A	I	D	D	R	T	Q	V	V	E	M	W	R	R	I	G	V	E	C	W	Q	V	A	S	G	D
Template Known Secondary structure				S	S			S														T	T	T	T																				T	T							S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions