Job Description P0ADP0 Confidence 96.86% Date Thu Jan 5 11:21:27 GMT 2012 Rank 121 Aligned Residues 119 % Identity 27% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	T	F	D	L	D	D	T	L	Y	D	N	R	P	V	I	L	R	T	E	R	E	A	L	T	F	V	Q	N	Y	H	P	A	L	R	S	F	Q	N	E	D	L	Q	R	L	R	Q	A	V	R	E	A	E	P	E	I	Y	H	D	V	T	R	W	R	F	R	S	I	E	Q	A	M	L	D	A	G	L	S
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	A	A	F	D	L	D	G	T	L	I	T	T	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	B	T	T	T				S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	E	A	S	A	G	A	H	A	A	M	I	N	F	A	K	W	R	S	R	I	D	V	P	Q	Q	T	H	D	T	L	K	Q	L	A	K	K	W	P	L	V	A	I	T	N	G	N	A	Q	P	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	L	G	D	Y	F	E	F	V	L
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	G	K	V	F	P	T	S	P	S	D	W	R	I	L	Y	P	E	I	P	K	K	L	Q	E	L	A	A	E	G	Y	K	L	V	I	F	T	N	Q	X	G	I	G	R	G	K	L	P	A	E	V	F	K	G	K	V	E	A	V	L	E	K	L	G	V	P	F	Q	V	L	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		S	S	S		S	S	T	T					S		T	T											T	T														T	T	S	S																	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.																.		190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.
Query SS confidence																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.
Query Sequence		R	A	G	P	H	G	R	S	K	P	F	S	D	M	Y	F	L	A	A	E	K	L	N	.	.	.	.	V	P	I	G	E	I	L	H	V	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	.	L	T	T	D	V	G	G	A	I	R	S	G	M	Q
Query Conservation																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.
Alig confidence																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.
Template Conservation
Template Sequence		A	T	H	A	G	L	N	R	K	P	V	S	G	X	W	D	H	L	Q	E	Q	A	N	E	G	I	P	I	S	V	E	D	S	V	F	V	G	D	A	A	G	R	L	A	N	W	A	P	G	R	K	K	K	D	F	S	C	A	D	R	L	F	A	L	N	V	G	L	P
Template Known Secondary structure				S	S	S	S	S	S	T	T	S	T									T	T	S	S	S					S	T	T						S		S		B		T	T	S	S	T	T			S			S												T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions