Job Description P37128 Confidence 98.78% Date Thu Jan 5 11:54:49 GMT 2012 Rank 79 Aligned Residues 105 % Identity 13% Template c2j8qB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. Resolution 2.3 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																																			.																	.	.
Query SS confidence																																																			.																	.	.
Query Sequence		R	G	N	G	A	T	I	L	L	Y	N	T	K	K	K	T	V	V	L	I	R	Q	F	R	V	A	T	W	V	N	G	N	E	S	G	Q	L	I	E	S	C	A	G	L	L	D	N	D	E	.	P	E	V	C	I	R	K	E	A	I	E	E	T	G	Y	E	.	.	V	G	E	V	R	K	L	F	E	L	Y	M
Query Conservation																																																			.																	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																	.																	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	.	.	.	.	.	.	.	.	.	.	G	T	T	F	F	K	L	P	G	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	R	Q	D	D	W	V	I	D	D	C	I	G	N	W	W	R
Template Known Secondary structure													S	S	S										.	.	.	.	.	.	.	.	.	.	S	T	T					S						T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.											100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		121	.	.	.	.	.	.														.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	P	G	G	V	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	H	F	F	I	A	E	Y	S	D	N	Q	R	A	N	A	G	G	G	V	E	D	E	D	I	E	V	L	E	L	P	F	S	Q	A
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		P	N	F	E	P	P	Q	Y	P	Y	I	P	A	H	I	T	K	P	K	E	H	K	K	L	F	L	V	Q	L	Q	E	K	A	L	F	A	V	.	.	.	.	.	P	K	N	Y	K	L	V	A	A	P	L	F	E	L
Template Known Secondary structure			S	S	S	S			B	S	S			T	T		S			S												S	S						.	.	.	.	.		T	T
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions