Job Description P02924 Confidence 100.00% Date Thu Jan 5 10:57:38 GMT 2012 Rank 7 Aligned Residues 283 % Identity 13% Template d1tjya_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.30

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		A	E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	I	K	I	.	.	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		G	S	A	E	R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	E	A	G	K	A	L	G	I	D	V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	V	N	N	F	V	N	Q	G	Y	D	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R
Template Known Secondary structure												S	S	S	S	S																		T									S	S																T	T		S							S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D
Query Conservation
Alig confidence																					.	.	.	.																													.	.	.	.
Template Conservation																					.	.	.	.																													.	.	.	.
Template Sequence		A	M	Q	R	G	V	K	I	L	T	W	D	S	D	T	K	P	E	C	.	.	.	.	R	S	Y	Y	I	N	Q	G	T	P	K	Q	L	G	S	M	L	V	E	M	A	A	H	Q	V	D	K	E	.	.	.	.	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A
Template Known Secondary structure					T	T							S	S				G	G	G	.	.	.	.		S					S																				S	S	.	.	.	.	S								S		S	S
Template Predicted Secondary structure																					.	.	.	.																													.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G	I	G	I	N	G	V	D	A	V
Query Conservation
Alig confidence							.																																			.	.																							.	.
Template Conservation							.																																			.	.																							.	.
Template Sequence		K	I	S	Q	E	.	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	I	K	A	Y	P	D	L	D	.	.	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	R	.	.	N	N	L	A	I	V	G	F	S	T	P	N	V	M
Template Known Secondary structure							.		T	T										T	T																	S	S			.	.						S	T	T												T	T		.	.		S						B
Template Predicted Secondary structure							.																																			.	.																							.	.
Template SS confidence
		177	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.																														.	.	.	.	.	.	310	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	V	T	D	V	V	L
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	R	P	Y	V	Q	R	G	T	V	K	E	F	G	L	W	D	V	V	Q	Q	G	K	I	S	V	Y	V	A	N	A	L	L	K	N	M	P	M	N	V	G	D	S	L	D	I	P	G	I	G	K	V	T	V	S	P	N	S	E	Q	G	Y	H	Y	E	A	K	G	N	G	I	V	L	L	P	E	R	V	I
Template Known Secondary structure		.	.							T	S		S																							T	T				S	T	T						T	T	T								G	G	G	G	T						T	T							S
Template Predicted Secondary structure		.	.
Template SS confidence
				252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	R	D	N	F	K	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	N	K	D	N	I	D	K	Y
Template Known Secondary structure				T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions