Job Description P02924 Confidence 98.16% Date Thu Jan 5 10:57:38 GMT 2012 Rank 91 Aligned Residues 218 % Identity 9% Template d1qo0a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.25

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		27	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure													.	.																	.	.	.	.	.	.	.						.	.	.
Query SS confidence													.	.																	.	.	.	.	.	.	.						.	.	.
Query Sequence		K	L	G	F	L	V	K	Q	P	E	E	.	.	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	.	.	.	.	.	.	.	L	G	F	E	V	.	.	.	I	K	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G
Query Conservation													.	.																	.	.	.	.	.	.	.						.	.	.
Alig confidence													.	.																	.	.	.	.	.	.	.						.	.	.
Template Conservation
Template Sequence		L	I	G	L	L	F	S	E	T	G	V	T	A	D	I	E	R	S	Q	R	Y	G	A	L	L	A	V	E	Q	L	N	R	E	G	G	V	G	G	R	P	I	E	T	L	S	Q	D	P	G	G	D	P	D	R	Y	R	L	C	A	E	D	F	I	R	N	R	G	V	R	F	L	V	G	C	Y	M	S	H	T	R
Template Known Secondary structure									S	S	S	T	T																					T	T		B	T	T	B										T	T																S										S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R
Query Conservation
Alig confidence																		.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.																																							.	.	.	.	.	.	.	.	.
Template Sequence		K	A	V	M	P	V	V	E	R	A	D	A	L	L	C	Y	.	.	.	P	T	P	Y	E	G	F	E	Y	S	P	N	I	V	Y	G	G	P	A	P	N	Q	N	S	A	P	L	A	A	Y	L	I	R	H	Y	G	E	R	.	.	.	.	.	.	.	.	.	V	V	F	I	G	S	D	Y	I	Y	P	R	E	S
Template Known Secondary structure												T						.	.	.		S									T	T					S			G	G	G	T												S		S		.	.	.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																		.	.	.																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G	I	G	I
Query Conservation
Alig confidence																		.																													.	.	.
Template Conservation																		.																													.	.	.
Template Sequence		N	H	V	M	R	H	L	Y	R	Q	H	G	G	T	V	L	.	E	E	I	Y	I	P	L	Y	P	S	D	D	D	L	Q	R	A	V	E	R	I	Y	Q	A	R	A	D	V	.	.	.	V	F	S	T	V	V	G	T	G	T	A	E	L	Y	R	A	I	A	R	R	Y	G	D	G	R	R	P	P	I	A	S	L
Template Known Secondary structure											T	T	T					.							S	S																	T		S		.	.	.							S	T	T														S	S								S
Template Predicted Secondary structure																		.																													.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		255	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	V	D	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	S	E	A	E
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions