Job Description P02924 Confidence 97.21% Date Thu Jan 5 10:57:38 GMT 2012 Rank 96 Aligned Residues 224 % Identity 8% Template d1dp4a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.									.	.	.	.	.	60	.	.	.	.									.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																		.	.	.																.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.																.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	.	.	.	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	.	.	.	.	.	.	.	.	G	F	E	V	I	K	I	A	V	P	.	.	.	.	.	.	.	.	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F
Query Conservation																		.	.	.																.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence																		.	.	.																.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	L	T	V	A	V	V	L	P	L	T	N	T	S	Y	P	W	S	W	A	R	V	G	P	A	V	E	L	A	L	A	R	V	K	A	R	P	D	L	L	P	G	W	T	V	R	M	V	L	G	S	S	E	N	A	A	G	V	C	S	D	T	A	A	P	L	A	A	V	D	L	K	W	E	H	S	P	A	V
Template Known Secondary structure												S	S				S	T	T																		T		T	T	S	S	T	T											B		T	T	S	S	B		T	T																S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		F	L	G	P	G	C	V	Y	S	A	A	P	V	G	R	F	T	A	H	W	R	V	P	L	L	T	A	G	A	P	A	L	G	I	G	V	K	D	E	Y	A	L	T	T	R	T	G	P	S	H	V	K	L	G	D	F	V	T	A	L	H	R	R	L	G	W	E	H	.	.	.	.	.	.	Q	A	L	V	L	Y
Template Known Secondary structure							S															T						S					G	G	G	G		T	T	T	S	T	T					S																		T			S	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F
Query Conservation
Alig confidence																																																									.	.	.
Template Conservation																																																									.	.	.
Template Sequence		A	D	R	L	G	D	D	R	P	C	F	F	I	V	E	G	L	Y	M	R	V	R	E	R	L	N	I	T	V	N	H	Q	E	F	V	E	G	D	P	D	H	Y	P	K	L	L	R	A	V	R	R	K	G	R	V	.	.	.	I	Y	I	C	S	S	P	D	A	F	R	N	L	M	L	L	A	L	N	A	G	L
Template Known Secondary structure					S	S	S																														T	T		G	G	G													S		.	.	.					S															T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		245	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	D	I	I	G	I	G	I	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	E	D	Y	V	F	F	H	L	D	V
Template Known Secondary structure			T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions