Job Description P02924 Confidence 98.29% Date Thu Jan 5 10:57:38 GMT 2012 Rank 89 Aligned Residues 234 % Identity 12% Template c3td9A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure														.	.																			.	.	.	.	.	.						.
Query SS confidence														.	.																			.	.	.	.	.	.						.
Query Sequence		L	K	L	G	F	L	V	K	Q	P	E	E	.	.	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	.	.	.	.	.	.	F	E	V	I	K	.	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A
Query Conservation														.	.																			.	.	.	.	.	.						.
Alig confidence														.	.																			.	.	.	.	.	.						.
Template Conservation
Template Sequence		V	K	I	A	V	I	L	P	X	T	G	G	I	S	A	F	G	R	X	V	W	E	G	I	Q	I	A	H	E	E	K	P	T	V	L	G	E	E	V	E	L	V	L	L	D	T	R	S	E	K	T	E	A	A	N	A	A	A	R	A	I	D	K	E	K	V	L	A	I	I	G	E	V	A	S	A	H	S	L	A
Template Known Secondary structure											S	S	T	T																						T	T											T	T															T	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T
Query Conservation
Alig confidence																		.																																								.	.	.	.	.	.	.
Template Conservation																		.																																								.	.	.	.	.	.	.
Template Sequence		I	A	P	I	A	E	E	N	K	V	P	X	V	T	P	A	.	S	T	N	P	L	V	T	Q	G	R	K	F	V	S	R	V	C	F	I	D	P	F	Q	G	A	A	X	A	V	F	A	Y	K	N	L	G	A	K	R	.	.	.	.	.	.	.	V	V	V	F	T	D	V	E	Q	D	Y	S	V	G	L	S	N
Template Known Secondary structure									T	T						S	S	.				G	G	G	T	T	T		S	S				S	S																	T	S					.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																		.																																								.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G	I	G	I	N	G
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.
Template Sequence		F	F	I	N	K	F	T	E	L	G	G	Q	V	K	R	V	F	F	R	S	G	D	Q	D	F	S	A	Q	L	S	V	A	X	S	F	.	.	.	.	.	.	.	N	P	D	A	I	Y	I	T	G	Y	Y	P	E	I	A	L	I	S	R	Q	A	R	Q	L	G	F	T	G	Y	I	L	A	G	D	G	A	D	A
Template Known Secondary structure										T	T										T	T														T	.	.	.	.	.	.	.			S						S															T	T			S						G	G	G		S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	L	I	E	I	G	G	E	A	V	E	G	L	L	F	T	T
Template Known Secondary structure		T							G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions