Job Description P02924 Confidence 99.83% Date Thu Jan 5 10:57:38 GMT 2012 Rank 71 Aligned Residues 238 % Identity 18% Template c3s99A_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak Resolution 2.05 Å

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		25	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																					.	.						.
Query SS confidence													.	.																					.	.						.
Query Sequence		N	L	K	L	G	F	L	V	K	Q	P	.	.	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	.	.	F	E	V	I	K	.	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A
Query Conservation													.	.																					.	.						.
Alig confidence													.	.																					.	.						.
Template Conservation
Template Sequence		K	L	K	V	G	F	I	Y	I	G	P	P	G	D	F	G	W	T	Y	Q	H	D	Q	A	R	K	E	L	V	E	A	L	G	D	K	V	E	T	T	F	L	E	N	V	A	E	G	A	D	A	E	R	S	I	K	R	I	A	R	A	G	N	K	L	I	F	T	T	S	F	G	Y	M	D	P	T	V	K	V	A
Template Known Secondary structure										S	S		G	G	G	S	S																	T	T	T								S			T	T													T	T		S						S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M
Query Conservation
Alig confidence					.																	.	.	.	.	.	.																	.											.	.	.	.	.	.
Template Conservation					.																	.	.	.	.	.	.																	.											.	.	.	.	.	.
Template Sequence		K	K	F	.	P	D	V	K	F	E	H	A	T	G	Y	K	T	A	D	N	.	.	.	.	.	.	M	S	A	Y	N	A	R	F	Y	E	G	R	Y	V	Q	G	.	V	I	A	A	K	M	S	K	K	G	.	.	.	.	.	.	I	A	G	Y	I	G	S	V	P	V	P	E	V	V	Q	G	I	N	S	F	M
Template Known Secondary structure		T	T		.	T	T	S						S					B	T	T	.	.	.	.	.	.																	.								S	S		.	.	.	.	.	.
Template Predicted Secondary structure					.																	.	.	.	.	.	.																	.											.	.	.	.	.	.
Template SS confidence
		100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G	I	G	I	N	G	V	D	A
Query Conservation
Alig confidence																																									.	.	.	.										.	.												.	.	.	.	.									.	.
Template Conservation																																									.	.	.	.										.	.												.	.	.	.	.									.	.
Template Sequence		L	G	A	Q	S	V	N	P	D	F	R	V	K	V	I	W	V	N	S	W	F	D	P	G	K	E	A	D	A	A	K	A	L	I	D	Q	G	V	D	.	.	.	.	I	I	T	Q	H	T	D	S	T	.	.	A	A	I	Q	V	A	H	D	R	G	I	.	.	.	.	.	K	A	F	G	Q	A	S	D	.	.
Template Known Secondary structure						T	T		T	T									S	S	S																T	T		S	.	.	.	.					S	S	S	S	S	.	.									T	T		.	.	.	.	.							S		.	.
Template Predicted Secondary structure																																									.	.	.	.										.	.												.	.	.	.	.									.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	M	I	K	F	A	P	D	T	Q	L	T	A	V	V	D	E	W	G	P	Y	Y	I	D	R	A	K	A	V	L	D
Template Known Secondary structure		.	.	.		G	G	G	S	T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions