Job Description P02924 Confidence 98.34% Date Thu Jan 5 10:57:38 GMT 2012 Rank 88 Aligned Residues 215 % Identity 11% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.														.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query Sequence		E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	V	I	K	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	.	.	.	.	S	G	A	K	G	F	V	I
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Alig confidence																				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																				.	.
Template Sequence		D	D	F	K	V	A	V	V	T	Q	P	L	S	E	N	K	V	Q	.	.	Y	N	X	V	E	E	X	A	K	E	Y	E	E	E	N	K	I	D	K	T	K	V	K	Q	T	I	K	H	V	V	L	P	E	N	F	T	S	N	I	D	S	A	I	N	K	I	V	K	L	A	D	D	K	E	V	Q	A	I	V	V
Template Known Secondary structure													T	T	T					.	.															T	T																	T	T	G	G	G	G										G	G	G	G		T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	T	P	D	P	K	L	G	S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N
Query Conservation
Alig confidence																																																																				.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.
Template Sequence		S	T	D	Q	A	G	L	L	P	A	L	Q	K	V	K	E	K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	V	N	L	G	V	S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	.	.	.	.	.	I	H	Y	A	S	T	D	D	L
Template Known Secondary structure				S	S															T	T	S					S	S			S									S	S																					T	T		S			.	.	.	.	.						T	T	G	G
Template Predicted Secondary structure																																																																				.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		E	L	D	T	A	R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	.	.	.	.	.	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.															.	.
Template Conservation																																																													.	.
Template Sequence		K	D	V	N	I	A	K	R	L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V	Q	V	N	T	P	N	I	N	T	E	E	D	K	N	K	V	K	Q	F	L	N	E	D	I	E	K	Q	V	K	K	Y	G	K	D	I	.	.	N	V	F	G	V	N	E	Y	X	D	E	V	I	L	T	K	A	L	E
Template Known Secondary structure		G	S																	T	T												S	S	T																							S			.	.					S	S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		242	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	F	K	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	Y	I	V	A
Template Known Secondary structure					B	B
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions