Job Description P02924 Confidence 97.05% Date Thu Jan 5 10:57:38 GMT 2012 Rank 97 Aligned Residues 256 % Identity 10% Template c3q41B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) Resolution 3.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.							.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.					.	.	90	.
Predicted Secondary structure																																				.	.	.	.	.	.			.																														.	.	.	.
Query SS confidence																																				.	.	.	.	.	.			.																														.	.	.	.
Query Sequence		A	E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	.	.	.	.	.	.	E	V	.	I	K	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	.	.	.	.	T	P	D	P
Query Conservation																																				.	.	.	.	.	.			.																														.	.	.	.
Alig confidence													.	.																						.	.	.	.	.	.			.																														.	.	.	.
Template Conservation													.	.
Template Sequence		P	K	I	V	N	I	G	A	V	L	S	.	.	T	R	K	H	E	Q	M	F	R	E	A	V	N	Q	A	N	K	R	H	G	S	W	K	I	Q	L	N	A	T	S	V	T	H	K	P	N	A	I	Q	M	A	L	S	V	C	E	D	L	I	S	S	Q	V	Y	A	I	L	V	S	H	P	P	T	P	N	D	H
Template Known Secondary structure												S	.	.	S																				S	S	S												S	S											T	T	G	G	G											S		T	T	T	T
Template Predicted Secondary structure													.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		K	L	G	S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	.	V	M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T
Query Conservation																																							.
Alig confidence																																							.																								.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.
Template Sequence		F	T	P	T	P	V	S	Y	T	A	G	F	Y	R	I	P	V	L	G	L	T	T	R	M	S	I	Y	S	D	K	S	I	H	L	S	F	L	R	T	V	P	P	Y	S	H	Q	S	S	V	W	F	E	M	M	R	V	Y	N	W	N	H	.	.	.	.	.	.	.	.	.	I	I	L	L	V	S	D	D	H	E
Template Known Secondary structure		T	T										T	T	T							S				G	G	G	G	S	S	S	S		T	T				S	S			G	G	G												B					.	.	.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.										.	.	.	.	.	.	.	170	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I
Query Conservation
Alig confidence																																											.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		G	R	A	A	Q	K	R	L	E	T	L	L	E	E	R	E	S	K	A	E	K	V	L	Q	F	D	P	G	T	K	N	V	T	A	L	L	M	E	A	R	E	.	.	.	.	.	.	L	E	A	R	V	I	I	L	S	A	S	E	D	D	A	A	T	V	Y	R	A	A	A	M	L	N	M	T	G	S	G	Y	V
Template Known Secondary structure														T	T	S	S											T	T		S											T	.	.	.	.	.	.	S	S																						T	T	T		S	S	T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		G	I	G	I	N	G	V	D	A	V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	.	.	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		W	L	V	G	E	R	E	I	S	G	N	A	L	R	Y	A	P	D	G	I	I	G	L	Q	L	I	N	G	K	N	E	S	A	H	I	S	D	A	V	G	V	V	A	Q	A	V	H
Template Known Secondary structure						T	T	T	T	S	T					T			T	T						B	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions