Job Description P02924 Confidence 26.08% Date Thu Jan 5 10:57:38 GMT 2012 Rank 257 Aligned Residues 264 % Identity 15% Template c3opyE_ PDB info PDB header:transferase Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state Resolution 3.05 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																																								.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	E	N	L	K	L	G	F	L	V	K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	I	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	G	K	K	K	I	A	I	I	T	S	G	G	D	A	P	G	M	N	A	A	V	R	A	V	T	R	A	G	I	F	Y	G	C	K	V	Y	A	C	Y	E	G	Y	T	G	L	V	K	G	G	D	M	L	K	E	L	Q	W	Q	D	V	R	G	L	L	S	I	G	G	T	I	I	G	T	A	R	C	K	E
Template Known Secondary structure					S									S	S			T	T															T	T								T							S		S	T	T						T	T	T	T	T	T	G	G	G			S		S	S					S	S	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.														.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	Y	D	M	K	V	I	A	V	D	D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		F	R	E	R	W	G	R	L	Q	A	C	Y	N	M	V	S	N	G	I	D	A	L	V	V	C	G	G	D	G	S	L	T	G	A	D	L	F	R	K	E	W	P	E	L	I	K	E	K	E	Q	Y	E	T	H	R	N	L	T	I	V	G	L	V	G	S	I	.	.	.	D	N	D	M	C	G	T	D	S	T	I
Template Known Secondary structure		T	T	S														T	T																							T	T												T	T	S										S	.	.	.	S				T	T		S
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I	Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A
Query Conservation
Alig confidence					.	.	.																																					.	.	.	.	.	.
Template Conservation					.	.	.																																					.	.	.	.	.	.
Template Sequence		G	A	Y	.	.	.	S	S	L	E	R	I	I	E	L	V	D	Y	I	D	A	T	A	A	S	H	S	R	A	F	V	V	E	V	M	G	R	H	C	G	W	L	.	.	.	.	.	.	G	L	M	S	G	I	A	T	G	A	D	Y	I	F	I	P	E	R	P	P	S	E	S	N	W	K	D	D	L	K	K	V
Template Known Secondary structure					.	.	.															S	S				T	T										S	S		T			.	.	.	.	.	.									T		S					T	T	S				T	T	T
Template Predicted Secondary structure					.	.	.																																					.	.	.	.	.	.
Template SS confidence
		372	.	.				.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410							.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.								.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																											.	.	.
Query SS confidence																					.	.	.	.	.	.	.																											.	.	.
Query Sequence		N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	.	.	.	.	.	.	.	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	G	I	G	I	.	.	.	N	G	V	D	A	V	S	E	L	S	K	A	Q	A	T	G	F	Y	G	S	L	L	P	S	P
Query Conservation																					.	.	.	.	.	.	.																											.	.	.
Alig confidence																					.	.	.	.	.	.	.																			.								.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	L	R	H	R	E	K	G	R	R	K	T	T	V	I	V	A	E	G	A	I	D	D	Q	L	N	P	I	T	S	E	E	V	K	D	V	L	V	E	I	G	L	D	T	.	R	I	T	R	L	G	H	V	Q	R	G	G	A	P	C	A	F	D	R	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Template Known Secondary structure								T	T										T	T		B		T	T	S		B												T	T	T				.						G	G	G	G	G		S										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.														.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	T	E	V	T	D	V	V	L	I	T
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		T	V	Q	G	V	D	A	V	R	A	V	L	E	S	.	.	T	P	A	I	P	S	P	V	I	S	I	L	E	N	K	I	V	R
Template Known Secondary structure														T		.	.		T	T	S								S	S	S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.			.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions